Identifying best-indicator species for abrupt transitions in multispecies communities

Abstract Whereas research primarily focuses on understanding under what conditions sudden transitions in the dynamics and functioning of ecological systems may occur, the scale and complexity of ecosystems limit our capacity to achieve this. Indicators of resilience may help circumvent such limitation by signalling the proximity of ecological systems close to an abrupt transition. However, their successful application strongly depends on the ecosystem under question. Therefore, if we aim to use resilience indicators for ecological management in practice, we need to understand where and how they can be reliably monitored. Here, we test the performance of resilience indicators across species in simple modules of competition to help recognize best-indicator species in a community. We show that differences in species sensitivity to disturbances in a community is affected by the dominant eigenvector of the linearized system at equilibrium, We then use simulated time series to compare trends in variance and autocorrelation across species and at community level. We found high heterogeneity in the strength of the indicators across species, while community-based indicators scored better on average than indicators at species level. Looking at species features, we found that collapsing and invading species showed strongest trends, but we observed no relationship between the number of species interaction links and indicators. Lastly, we explored whether it is possible to identify best-indicator species based on their contribution to community variability using eigenvector decomposition methods Our results suggest that successfully identifying a best-indicator species for critical transitions in multispecies communities is not an easy task.

[1]  S. Pimm The complexity and stability of ecosystems , 1984, Nature.

[2]  S. Wanless,et al.  Do early warning indicators consistently predict nonlinear change in long‐term ecological data? , 2016 .

[3]  S. Carpenter,et al.  Early Warnings of Regime Shifts: A Whole-Ecosystem Experiment , 2011, Science.

[4]  Christian Wissel,et al.  Babel, or the ecological stability discussions: an inventory and analysis of terminology and a guide for avoiding confusion , 1997, Oecologia.

[5]  S. Carpenter,et al.  Interacting regime shifts in ecosystems: implication for early warnings , 2010 .

[6]  G. Daskalov,et al.  Trophic cascades triggered by overfishing reveal possible mechanisms of ecosystem regime shifts , 2007, Proceedings of the National Academy of Sciences.

[7]  Albert-László Barabási,et al.  Universal resilience patterns in complex networks , 2016, Nature.

[8]  J. Bascompte,et al.  Compartmentalization increases food-web persistence , 2011, Proceedings of the National Academy of Sciences.

[9]  Carl Boettiger,et al.  Quantifying limits to detection of early warning for critical transitions , 2012, Journal of The Royal Society Interface.

[10]  Marten Scheffer,et al.  Large Species Shifts Triggered by Small Forces , 2004, The American Naturalist.

[11]  R. Hilborn,et al.  Frequency and intensity of productivity regime shifts in marine fish stocks , 2013, Proceedings of the National Academy of Sciences.

[12]  V. Jansen,et al.  Variability in interaction strength and implications for biodiversity , 2002 .

[13]  V. Guttal,et al.  Changing skewness: an early warning signal of regime shifts in ecosystems. , 2008, Ecology letters.

[14]  S. Carpenter,et al.  Generic Indicators of Ecological Resilience: Inferring the Chance of a Critical Transition , 2015 .

[15]  V. Dakos,et al.  Evaluating early-warning indicators of critical transitions in natural aquatic ecosystems , 2016, Proceedings of the National Academy of Sciences.

[16]  J. Huisman,et al.  Biodiversity of plankton by species oscillations and chaos , 1999, Nature.

[17]  Lei Dai,et al.  Generic Indicators for Loss of Resilience Before a Tipping Point Leading to Population Collapse , 2012, Science.

[18]  S. Carpenter,et al.  Reversal of a cyanobacterial bloom in response to early warnings , 2016, Proceedings of the National Academy of Sciences.

[19]  M. Rietkerk,et al.  Self-Organized Patchiness and Catastrophic Shifts in Ecosystems , 2004, Science.

[20]  S. Carpenter,et al.  Changes in ecosystem resilience detected in automated measures of ecosystem metabolism during a whole-lake manipulation , 2013, Proceedings of the National Academy of Sciences.

[21]  S. Carpenter,et al.  Catastrophic shifts in ecosystems , 2001, Nature.

[22]  D. Tilman Resource competition and community structure. , 1983, Monographs in population biology.

[23]  M. Scheffer,et al.  The sudden collapse of pollinator communities. , 2014, Ecology letters.

[24]  Jordi Bascompte,et al.  SIMPLE TROPHIC MODULES FOR COMPLEX FOOD WEBS , 2005 .

[25]  Jordi Bascompte,et al.  The architecture of mutualistic networks minimizes competition and increases biodiversity , 2009, Nature.

[26]  S. Carpenter,et al.  Resilience indicators: prospects and limitations for early warnings of regime shifts , 2015, Philosophical Transactions of the Royal Society B: Biological Sciences.

[27]  A. Ives,et al.  Stability and variability in competitive communities. , 1999, Science.

[28]  M. Scheffer,et al.  Slowing down as an early warning signal for abrupt climate change , 2008, Proceedings of the National Academy of Sciences.

[29]  S. Carpenter,et al.  Methods for Detecting Early Warnings of Critical Transitions in Time Series Illustrated Using Simulated Ecological Data , 2012, PloS one.

[30]  S. Carpenter,et al.  Rising variance: a leading indicator of ecological transition. , 2006, Ecology letters.

[31]  C. Wissel A universal law of the characteristic return time near thresholds , 1984, Oecologia.

[32]  J. Vandermeer The inevitability of surprise in agroecosystems , 2011 .

[33]  C. Kuehn A mathematical framework for critical transitions: Bifurcations, fast–slow systems and stochastic dynamics , 2011, 1101.2899.

[34]  J. C. Marlin,et al.  Plant-Pollinator Interactions over 120 Years: Loss of Species, Co-Occurrence, and Function , 2013, Science.

[35]  J. Drake,et al.  Early warning signals of extinction in deteriorating environments , 2010, Nature.

[36]  M. Boerlijst,et al.  Catastrophic Collapse Can Occur without Early Warning: Examples of Silent Catastrophes in Structured Ecological Models , 2013, PloS one.

[37]  Anthony R. Ives,et al.  Measuring Resilience in Stochastic Systems , 1995 .

[38]  T. Kleinen,et al.  Detection of climate system bifurcations by degenerate fingerprinting , 2004 .

[39]  J. Bascompte,et al.  Critical slowing down as early warning for the onset of collapse in mutualistic communities , 2014, Proceedings of the National Academy of Sciences of the United States of America.

[40]  S. Carpenter,et al.  Anticipating Critical Transitions , 2012, Science.

[41]  S. Shen-Orr,et al.  Network motifs: simple building blocks of complex networks. , 2002, Science.

[42]  L. Fahrig Effects of Habitat Fragmentation on Biodiversity , 2003 .

[43]  I. Tegen,et al.  Relative importance of climate and land use in determining present and future global soil dust emission , 2004 .

[44]  P. Raven,et al.  Biodiversity: Extinction by numbers , 2000, Nature.

[45]  Derin B. Wysham,et al.  Regime shifts in ecological systems can occur with no warning. , 2010, Ecology letters.

[46]  S. Carpenter,et al.  Leading indicators of trophic cascades. , 2007, Ecology letters.

[47]  Jordi Bascompte,et al.  Understanding food-web persistence from local to global scales. , 2010, Ecology letters.

[48]  V. Volterra Variations and Fluctuations of the Number of Individuals in Animal Species living together , 1928 .