Genome-wide characterization of the WAK gene family and expression analysis under plant hormone treatment in cotton

[1]  Yanxiu Zhao,et al.  RNA-seq reveals hormone-regulated synthesis of non-cellulose polysaccharides associated with fiber strength in a single-chromosomal-fragment-substituted upland cotton line , 2020 .

[2]  K. Siddique,et al.  Ameliorative effects of potassium on drought-induced decreases in fiber length of cotton (Gossypium hirsutum L.) are associated with osmolyte dynamics during fiber development , 2019, The Crop Journal.

[3]  Guodong Wang,et al.  Comprehensive expression analysis of Arabidopsis GA2-oxidase genes and their functional insights. , 2019, Plant science : an international journal of experimental plant biology.

[4]  Penghui Zhao,et al.  Comprehensive analyses of ZFP gene family and characterization of expression profiles during plant hormone response in cotton , 2019, BMC Plant Biology.

[5]  Cai-rui Lu,et al.  Genome-wide comparative analysis of RNA-binding Glycine-rich protein family genes between Gossypium arboreum and Gossypium raimondii , 2019, PloS one.

[6]  Guodong Wang,et al.  Auxin-mediated statolith production for root gravitropism. , 2019, The New phytologist.

[7]  A. Giancaspro,et al.  Map-based cloning of QFhb.mgb-2A identifies a WAK2 gene responsible for Fusarium Head Blight resistance in wheat , 2019, Scientific Reports.

[8]  Jing Jiang,et al.  The integration of ACS2-generated ACC with GH3-mediated IAA homeostasis in NaCl-stressed primary root elongation of Arabidopsis seedlings , 2019, Plant Growth Regulation.

[9]  Lei Fang,et al.  Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton , 2019, Nature Genetics.

[10]  Konstantinos D. Tsirigos,et al.  SignalP 5.0 improves signal peptide predictions using deep neural networks , 2019, Nature Biotechnology.

[11]  B. Keller,et al.  Fungal resistance mediated by maize wall-associated kinase ZmWAK-RLK1 correlates with reduced benzoxazinoid content. , 2018, The New phytologist.

[12]  Ling Min,et al.  Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense , 2018, Nature Genetics.

[13]  Shuxun Yu,et al.  Genome-wide identification and expression analyses of the pectate lyase (PEL) gene family in cotton (Gossypium hirsutum L.) , 2018, BMC Genomics.

[14]  C. Zuo,et al.  Genome-wide annotation and expression responses to biotic stresses of the WALL-ASSOCIATED KINASE - RECEPTOR-LIKE KINASE (WAK-RLK) gene family in Apple (Malus domestica) , 2018, European Journal of Plant Pathology.

[15]  Hao Liu,et al.  Genome-wide identification of the GhARF gene family reveals that GhARF2 and GhARF18 are involved in cotton fibre cell initiation , 2018, Journal of experimental botany.

[16]  Hongsheng Zhang,et al.  OsWAK11, a rice wall-associated kinase, regulates Cu detoxification by alteration the immobilization of Cu in cell walls , 2018 .

[17]  Wei Fan,et al.  Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits , 2018, Nature Genetics.

[18]  Fushun Hao,et al.  Aquaporin AtTIP5;1 as an essential target of gibberellins promotes hypocotyl cell elongation in Arabidopsis thaliana under excess boron stress. , 2018, Functional plant biology : FPB.

[19]  Dan Zou,et al.  The cotton (Gossypium hirsutum) NAC transcription factor (FSN1) as a positive regulator participates in controlling secondary cell wall biosynthesis and modification of fibers. , 2018, The New phytologist.

[20]  S-F Lv,et al.  Activation of gibberellin 20-oxidase 2 undermines auxin-dependent root and root hair growth in NaCl-stressed Arabidopsis seedlings , 2018, Plant Growth Regulation.

[21]  Jelena Kusakina,et al.  The Energy-Signaling Hub SnRK1 Is Important for Sucrose-Induced Hypocotyl Elongation1[CC-BY] , 2017, Plant Physiology.

[22]  L. Taconnat,et al.  The bile acid deoxycholate elicits defences in Arabidopsis and reduces bacterial infection. , 2017, Molecular plant pathology.

[23]  G. Xiao,et al.  A Genome-Scale Analysis of the PIN Gene Family Reveals Its Functions in Cotton Fiber Development , 2017, Front. Plant Sci..

[24]  Xianghua Li,et al.  Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement , 2017, Nature Plants.

[25]  Chengcheng Tao,et al.  Two-Dimensional Gel Electrophoresis-Based Proteomic Analysis Reveals N-terminal Truncation of the Hsc70 Protein in Cotton Fibers In Vivo , 2016, Scientific Reports.

[26]  Lei Wang,et al.  Genome-wide characterization of soybean P1B-ATPases gene family provides functional implications in cadmium responses , 2016, BMC Genomics.

[27]  Sudhir Kumar,et al.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. , 2016, Molecular biology and evolution.

[28]  T. Kroj,et al.  Three wall-associated kinases required for rice basal immunity form protein complexes in the plasma membrane , 2016, Plant signaling & behavior.

[29]  T. Kroj,et al.  Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus , 2016, BMC Plant Biology.

[30]  Yuxian Zhu,et al.  Genome‐scale analysis of the cotton KCS gene family revealed a binary mode of action for gibberellin A regulated fiber growth , 2015, Journal of integrative plant biology.

[31]  Emily M. Strait,et al.  The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome , 2015, Genesis.

[32]  T. Wicker,et al.  The maize disease resistance gene Htn1 against northern corn leaf blight encodes a wall-associated receptor-like kinase , 2015, Proceedings of the National Academy of Sciences.

[33]  Q. Song,et al.  Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall synthesis, represses lignification, and prolongs elongation , 2015, BMC Genomics.

[34]  Lei Fang,et al.  Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement , 2015, Nature Biotechnology.

[35]  He Zhang,et al.  Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution , 2015, Nature Biotechnology.

[36]  Jing Zhao,et al.  A maize wall-associated kinase confers quantitative resistance to head smut , 2014, Nature Genetics.

[37]  Bo Hu,et al.  GSDS 2.0: an upgraded gene feature visualization server , 2014, Bioinform..

[38]  Xun Xu,et al.  Genome sequence of the cultivated cotton Gossypium arboreum , 2014, Nature Genetics.

[39]  S. Maury,et al.  In silico study of wall-associated kinase family reveals large-scale genomic expansion potentially connected with functional diversification in Populus , 2014, Tree Genetics & Genomes.

[40]  Cai-rui Lu,et al.  Distribution and characterization of simple sequence repeats in Gossypium raimondii genome , 2012, Bioinformation.

[41]  John Z. Yu,et al.  The draft genome of a diploid cotton Gossypium raimondii , 2012, Nature Genetics.

[42]  Jie Ying Gao,et al.  Genome-wide analysis of the LEA (late embryogenesis abundant) protein gene family in Populus trichocarpa , 2012, Tree Genetics & Genomes.

[43]  Vassilios Ioannidis,et al.  ExPASy: SIB bioinformatics resource portal , 2012, Nucleic Acids Res..

[44]  William Underwood,et al.  The Plant Cell Wall: A Dynamic Barrier Against Pathogen Invasion , 2012, Front. Plant Sci..

[45]  B. Pati,et al.  Characterization of Tannase Protein Sequences of Bacteria and Fungi: An In Silico Study , 2012, The Protein Journal.

[46]  Jeremy D. DeBarry,et al.  MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity , 2012, Nucleic acids research.

[47]  Xianbi Li,et al.  Spatiotemporal manipulation of auxin biosynthesis in cotton ovule epidermal cells enhances fiber yield and quality , 2011, Nature Biotechnology.

[48]  A. Macone,et al.  A domain swap approach reveals a role of the plant wall-associated kinase 1 (WAK1) as a receptor of oligogalacturonides , 2010, Proceedings of the National Academy of Sciences.

[49]  Steven J. M. Jones,et al.  Circos: an information aesthetic for comparative genomics. , 2009, Genome research.

[50]  Adity Gupta,et al.  Wall associated kinases from plants — an overview , 2008, Physiology and Molecular Biology of Plants.

[51]  C. Fankhauser,et al.  A molecular framework for light and gibberellin control of cell elongation , 2008, Nature.

[52]  Zhu Yu-xian,et al.  A brief summary of major advances in cotton functional genomics and molecular breeding studies in China , 2007 .

[53]  Paul Horton,et al.  Nucleic Acids Research Advance Access published May 21, 2007 WoLF PSORT: protein localization predictor , 2007 .

[54]  W. Rychlik,et al.  OLIGO 7 primer analysis software. , 2007, Methods in molecular biology.

[55]  R. Stipanovic,et al.  Engineering cottonseed for use in human nutrition by tissue-specific reduction of toxic gossypol , 2006, Proceedings of the National Academy of Sciences.

[56]  K. Koch,et al.  An Arabidopsis cell wall-associated kinase required for invertase activity and cell growth. , 2006, The Plant journal : for cell and molecular biology.

[57]  Li-Ping Wei,et al.  Transcriptome Profiling, Molecular Biological, and Physiological Studies Reveal a Major Role for Ethylene in Cotton Fiber Cell Elongation[W][OA] , 2006, The Plant Cell Online.

[58]  Lei Li,et al.  Evolutionary Expansion, Gene Structure, and Expression of the Rice Wall-Associated Kinase Gene Family1[w] , 2005, Plant Physiology.

[59]  A. Decreux,et al.  Wall-associated kinase WAK1 interacts with cell wall pectins in a calcium-induced conformation. , 2005, Plant & cell physiology.

[60]  N. Provart,et al.  A comprehensive expression analysis of the Arabidopsis proline-rich extensin-like receptor kinase gene family using bioinformatic and experimental approaches. , 2004, Plant & cell physiology.

[61]  Hideki Takahashi,et al.  Antagonistic interactions between the SA and JA signaling pathways in Arabidopsis modulate expression of defense genes and gene-for-gene resistance to cucumber mosaic virus. , 2004, Plant & cell physiology.

[62]  D. He,et al.  WAKs: cell wall-associated kinases linking the cytoplasm to the extracellular matrix , 2001, Plant Molecular Biology.

[63]  Zheng-Hui He,et al.  A cluster of five cell wall-associated receptor kinase genes, Wak1–5, are expressed in specific organs of Arabidopsis , 1999, Plant Molecular Biology.

[64]  Jingchu Luo,et al.  Secreted protein prediction system combining CJ-SPHMM, TMHMM, and PSORT , 2003, Mammalian Genome.

[65]  S. Yoshida,et al.  Physiological Roles of Brassinosteroids in Early Growth of Arabidopsis: Brassinosteroids Have a Synergistic Relationship with Gibberellin as well as Auxin in Light-Grown Hypocotyl Elongation , 2003, Journal of Plant Growth Regulation.

[66]  F. Baluška,et al.  Aluminum-Induced Gene Expression and Protein Localization of a Cell Wall-Associated Receptor Kinase in Arabidopsis1 , 2003, Plant Physiology.

[67]  Yuxian Zhu,et al.  Isolation and analyses of genes preferentially expressed during early cotton fiber development by subtractive PCR and cDNA array. , 2003, Nucleic acids research.

[68]  Hilde van der Togt,et al.  Publisher's Note , 2003, J. Netw. Comput. Appl..

[69]  R. Voorrips.  MapChart: software for the graphical presentation of linkage maps and QTLs. , 2002, The Journal of heredity.

[70]  Amos Bairoch,et al.  ScanProsite: a reference implementation of a PROSITE scanning tool. , 2002, Applied bioinformatics.

[71]  T. Yoshizumi,et al.  DFL1, an auxin-responsive GH3 gene homologue, negatively regulates shoot cell elongation and lateral root formation, and positively regulates the light response of hypocotyl length. , 2008, The Plant journal : for cell and molecular biology.

[72]  Thomas D. Schmittgen,et al.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.

[73]  B. D. Kohorn.  WAKs; cell wall associated kinases. , 2001, Current opinion in cell biology.

[74]  Zheng-Hui He,et al.  Antisense Expression of a Cell Wall–Associated Protein Kinase, WAK4, Inhibits Cell Elongation and Alters Morphology , 2001, The Plant Cell Online.

[75]  B. D. Kohorn,et al.  Wall-Associated Kinases Are Expressed throughout Plant Development and Are Required for Cell Expansion , 2001, Plant Cell.

[76]  Junchao Huang,et al.  Modified CTAB protocol using a silica matrix for isolation of plant genomic DNA. , 2000, BioTechniques.

[77]  Stephane Rombauts,et al.  PlantCARE, a plant cis-acting regulatory element database , 1999, Nucleic Acids Res..

[78]  Darren George,et al.  SPSS for Windows Step by Step: A Simple Guide and Reference , 1998 .

[79]  Z. He,et al.  Requirement for the induced expression of a cell wall associated receptor kinase for survival during the pathogen response. , 1998, The Plant journal : for cell and molecular biology.

[80]  Ziheng Yang,et al.  PAML: a program package for phylogenetic analysis by maximum likelihood , 1997, Comput. Appl. Biosci..

[81]  B. D. Kohorn,et al.  A Cell Wall-associated, Receptor-like Protein Kinase* , 1996, The Journal of Biological Chemistry.

[82]  T. Komari,et al.  Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. , 1994, The Plant journal : for cell and molecular biology.