DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis
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V. Rubio | A. Genovesio | Ikhlak Ahmed | C. Bowler | D. Eeckhout | G. De Jaeger | F. Barneche | K. Gevaert | Ouardia Ait-Mohamed | Anne-Flore Deton-Cabanillas | Bérangère Lombard | D. Loew | A. Nassrallah | Martin Rougée | Clara Bourbousse | S. Drevensek | Elisa Iniesto | G. Zabulon | David Stroebel | Vanessa Masson | C. Breyton | Sandra Fonseca | Auguste Genovesio | Fredy Barneche
[1] R. Merkl,et al. The Adaptor Protein ENY2 Is a Component of the Deubiquitination Module of the Arabidopsis SAGA Transcriptional Co-activator Complex but not of the TREX-2 Complex. , 2018, Journal of molecular biology.
[2] Marion Grasser,et al. The plant RNA polymerase II elongation complex: A hub coordinating transcript elongation and mRNA processing , 2018, Transcription.
[3] S. Farrona,et al. Plant Deubiquitinases and Their Role in the Control of Gene Expression Through Modification of Histones , 2018, Front. Plant Sci..
[4] Lukas Zimmermann,et al. A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core. , 2017, Journal of molecular biology.
[5] K. McManus,et al. Ubiquitin Specific Peptidase 22 Regulates Histone H2B Mono-Ubiquitination and Exhibits Both Oncogenic and Tumor Suppressor Roles in Cancer , 2017, Cancers.
[6] S. Hahn,et al. SAGA is a general cofactor for RNA polymerase II transcription , 2017, Molecular cell.
[7] G. Längst,et al. The Composition of the Arabidopsis RNA Polymerase II Transcript Elongation Complex Reveals the Interplay between Elongation and mRNA Processing Factors[OPEN] , 2017, Plant Cell.
[8] J. Chory,et al. Dancing in the dark: darkness as a signal in plants. , 2017, Plant, cell & environment.
[9] P. Kemmeren,et al. Molecular mechanisms that distinguish TFIID housekeeping from regulatable SAGA promoters , 2016, The EMBO journal.
[10] E. Kaiserli,et al. Light behind the curtain: photoregulation of nuclear architecture and chromatin dynamics in plants , 2016, The New phytologist.
[11] Liisa Holm,et al. Dali server update , 2016, Nucleic Acids Res..
[12] A. Carr,et al. CRL4Wdr70 regulates H2B monoubiquitination and facilitates Exo1-dependent resection , 2016, Nature Communications.
[13] F. Aquea,et al. Composition of the SAGA complex in plants and its role in controlling gene expression in response to abiotic stresses , 2015, Front. Plant Sci..
[14] M. Mann,et al. Histone monoubiquitination by Clock–Bmal1 complex marks Per1 and Per2 genes for circadian feedback , 2015, Nature Structural &Molecular Biology.
[15] K. M. Rai,et al. Spt-Ada-Gcn5-Acetyltransferase (SAGA) Complex in Plants: Genome Wide Identification, Evolutionary Conservation and Functional Determination , 2015, PloS one.
[16] C. Bowler,et al. Light signaling controls nuclear architecture reorganization during seedling establishment , 2015, Proceedings of the National Academy of Sciences.
[17] Michael J E Sternberg,et al. The Phyre2 web portal for protein modeling, prediction and analysis , 2015, Nature Protocols.
[18] Lennart Martens,et al. An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes , 2014, Nature Protocols.
[19] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[20] David A. Orlando,et al. Quantitative ChIP-Seq normalization reveals global modulation of the epigenome. , 2014, Cell reports.
[21] J. Bonnet,et al. Mapping the deubiquitination module within the SAGA complex. , 2014, Structure.
[22] M. Van Lijsebettens,et al. Transcript elongation factors: shaping transcriptomes after transcript initiation. , 2014, Trends in plant science.
[23] Shane J. Neph,et al. Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana. , 2014, Cell reports.
[24] L. Tora,et al. The SAGA coactivator complex acts on the whole transcribed genome and is required for RNA polymerase II transcription , 2014, Genes & development.
[25] Paul Theodor Pyl,et al. HTSeq – A Python framework to work with high-throughput sequencing data , 2014, bioRxiv.
[26] P. Más,et al. The impact of chromatin dynamics on plant light responses and circadian clock function. , 2014, Journal of experimental botany.
[27] Shu-Hsing Wu,et al. Gene expression regulation in photomorphogenesis from the perspective of the central dogma. , 2014, Annual review of plant biology.
[28] V. Rubio,et al. Targeted Degradation of Abscisic Acid Receptors Is Mediated by the Ubiquitin Ligase Substrate Adaptor DDA1 in Arabidopsis[W] , 2014, Plant Cell.
[29] W. Shen,et al. Dynamic regulation and function of histone monoubiquitination in plants , 2014, Front. Plant Sci..
[30] Daeyoup Lee,et al. Separation of a functional deubiquitylating module from the SAGA complex by the proteasome regulatory particle , 2013, Nature Communications.
[31] A. Shilatifard,et al. Transcriptional elongation checkpoint control in development and disease. , 2013, Genes & development.
[32] J. Casal. Photoreceptor signaling networks in plant responses to shade. , 2013, Annual review of plant biology.
[33] S. Hörtensteiner,et al. 7-Hydroxymethyl chlorophyll a reductase functions in metabolic channeling of chlorophyll breakdown intermediates during leaf senescence. , 2013, Biochemical and biophysical research communications.
[34] X. Deng,et al. The Photomorphogenic Repressors Cop1 and Det1: 20 Years Later , 2022 .
[35] C. Wolberger,et al. A role for intersubunit interactions in maintaining SAGA deubiquitinating module structure and activity. , 2012, Structure.
[36] Ikhlak Ahmed,et al. Histone H2B Monoubiquitination Facilitates the Rapid Modulation of Gene Expression during Arabidopsis Photomorphogenesis , 2012, PLoS genetics.
[37] S. Henikoff,et al. A unified phylogeny-based nomenclature for histone variants , 2012, Epigenetics & Chromatin.
[38] Helga Thorvaldsdóttir,et al. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration , 2012, Briefings Bioinform..
[39] Vikki M. Weake,et al. SAGA function in tissue-specific gene expression. , 2012, Trends in cell biology.
[40] Xing Wang Deng,et al. Interaction of Arabidopsis DET1 with CCA1 and LHY in mediating transcriptional repression in the plant circadian clock. , 2011, Molecular cell.
[41] Philip Lijnzaad,et al. The specificity and topology of chromatin interaction pathways in yeast. , 2011, Molecular cell.
[42] M. Martin-Magniette,et al. Integrative epigenomic mapping defines four main chromatin states in Arabidopsis , 2011, The EMBO Journal.
[43] C. Bowler,et al. The conserved factor DE‐ETIOLATED 1 cooperates with CUL4–DDB1DDB2 to maintain genome integrity upon UV stress , 2011, The EMBO journal.
[44] F. Peschke,et al. Genome-Wide Analysis of Light-Dependent Transcript Accumulation Patterns during Early Stages of Arabidopsis Seedling Deetiolation1[W][OA] , 2011, Plant Physiology.
[45] D. Raleigh,et al. Histone H2B ubiquitylation disrupts local and higher order chromatin compaction , 2010, Nature chemical biology.
[46] L. Selth,et al. Transcript Elongation by RNA Polymerase II. , 2010, Annual review of biochemistry.
[47] Robert E. Cohen,et al. Structural Insights into the Assembly and Function of the SAGA Deubiquitinating Module , 2010, Science.
[48] E. Hurt,et al. Structural Basis for Assembly and Activation of the Heterotetrameric SAGA Histone H2B Deubiquitinase Module , 2010, Cell.
[49] J. Chory. Light signal transduction: an infinite spectrum of possibilities. , 2010, The Plant journal : for cell and molecular biology.
[50] Xing Wang Deng,et al. Dynamic Landscapes of Four Histone Modifications during Deetiolation in Arabidopsis[W] , 2009, The Plant Cell Online.
[51] D. Stillman,et al. yFACT induces global accessibility of nucleosomal DNA without H2A-H2B displacement. , 2009, Molecular cell.
[52] S. Rodríguez-Navarro,et al. Insights into SAGA function during gene expression , 2009, EMBO reports.
[53] J. Workman,et al. Yeast Sgf73/Ataxin-7 serves to anchor the deubiquitination module into both SAGA and Slik(SALSA) HAT complexes , 2009, Epigenetics & Chromatin.
[54] Robert J. Schmitz,et al. Histone H2B Deubiquitination Is Required for Transcriptional Activation of FLOWERING LOCUS C and for Proper Control of Flowering in Arabidopsis1[C][W][OA] , 2008, Plant Physiology.
[55] S. Berger,et al. Corrigendum: The histone H2B-specific ubiquitin ligase RNF20/hBRE1 acts as a putative tumor suppressor through selective regulation of gene expression. , 2008, Genes & development.
[56] Ligeng Ma,et al. Histone H2B Monoubiquitination in the Chromatin of FLOWERING LOCUS C Regulates Flowering Time in Arabidopsis[W] , 2008, The Plant Cell Online.
[57] Clifford A. Meyer,et al. Model-based Analysis of ChIP-Seq (MACS) , 2008, Genome Biology.
[58] D. Buzas,et al. UBIQUITIN-SPECIFIC PROTEASE 26 Is Required for Seed Development and the Repression of PHERES1 in Arabidopsis , 2008, Genetics.
[59] M. Osley,et al. H2B ubiquitylation plays a role in nucleosome dynamics during transcription elongation. , 2008, Molecular cell.
[60] Z. Abraham,et al. Identification of ubiquitinated proteins in Arabidopsis , 2008, Plant Molecular Biology.
[61] E. Hurt,et al. Yeast Ataxin-7 links histone deubiquitination with gene gating and mRNA export , 2008, Nature Cell Biology.
[62] Vikki M. Weake,et al. Histone ubiquitination: triggering gene activity. , 2008, Molecular cell.
[63] Eran Segal,et al. Monoubiquitinated H2B is associated with the transcribed region of highly expressed genes in human cells , 2008, Nature Cell Biology.
[64] Vikki M. Weake,et al. SAGA‐mediated H2B deubiquitination controls the development of neuronal connectivity in the Drosophila visual system , 2008, The EMBO journal.
[65] M. Dubin,et al. A modified Gateway cloning strategy for overexpressing tagged proteins in plants , 2008, Plant Methods.
[66] W. Gruissem,et al. Characterization of post-translational modifications of histone H2B-variants isolated from Arabidopsis thaliana. , 2007, Journal of proteome research.
[67] Emmanuel Barillot,et al. myProMS, a web server for management and validation of mass spectrometry‐based proteomic data , 2007, Proteomics.
[68] T. Hughes,et al. H2B ubiquitylation acts as a barrier to Ctk1 nucleosomal recruitment prior to removal by Ubp8 within a SAGA-related complex. , 2007, Molecular cell.
[69] Y. Niwa,et al. Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation. , 2007, Journal of bioscience and bioengineering.
[70] Jianjun Zhu,et al. Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination , 2007, Nature.
[71] X. Deng,et al. Mammalian DET1 Regulates Cul4A Activity and Forms Stable Complexes with E2 Ubiquitin-Conjugating Enzymes , 2007, Molecular and Cellular Biology.
[72] P. Westhoff,et al. The Nuclear-Encoded Factor HCF173 Is Involved in the Initiation of Translation of the psbA mRNA in Arabidopsis thaliana[W] , 2007, The Plant Cell Online.
[73] Bing Li,et al. The Role of Chromatin during Transcription , 2007, Cell.
[74] Maarten Koornneef,et al. The Absence of Histone H2B Monoubiquitination in the Arabidopsis hub1 (rdo4) Mutant Reveals a Role for Chromatin Remodeling in Seed Dormancy[W][OA] , 2007, The Plant Cell Online.
[75] Dirk Inzé,et al. The Arabidopsis thaliana Homolog of Yeast BRE1 Has a Function in Cell Cycle Regulation during Early Leaf and Root Growth[W][OA] , 2007, The Plant Cell Online.
[76] X. Deng. Faculty Opinions recommendation of Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression. , 2006 .
[77] Daoxiu Zhou,et al. Arabidopsis GCN5, HD1, and TAF1/HAF2 Interact to Regulate Histone Acetylation Required for Light-Responsive Gene Expression , 2006, The Plant Cell Online.
[78] E. Hurt,et al. The mRNA export factor Sus1 is involved in Spt/Ada/Gcn5 acetyltransferase-mediated H2B deubiquitinylation through its interaction with Ubp8 and Sgf11. , 2006, Molecular biology of the cell.
[79] D. Reinberg,et al. Histone H2B Monoubiquitination Functions Cooperatively with FACT to Regulate Elongation by RNA Polymerase II , 2006, Cell.
[80] D. Gottschling,et al. Ubp10/Dot4p Regulates the Persistence of Ubiquitinated Histone H2B: Distinct Roles in Telomeric Silencing and General Chromatin , 2005, Molecular and Cellular Biology.
[81] J. Workman,et al. The Deubiquitylation Activity of Ubp8 Is Dependent upon Sgf11 and Its Association with the SAGA Complex , 2005, Molecular and Cellular Biology.
[82] Setsuko Komatsu,et al. Arabidopsis COP10 forms a complex with DDB1 and DET1 in vivo and enhances the activity of ubiquitin conjugating enzymes. , 2004, Genes & development.
[83] R. Deshaies,et al. Human De-Etiolated-1 Regulates c-Jun by Assembling a CUL4A Ubiquitin Ligase , 2004, Science.
[84] Oreto Antúnez,et al. Sus1, a Functional Component of the SAGA Histone Acetylase Complex and the Nuclear Pore-Associated mRNA Export Machinery , 2004, Cell.
[85] S. Kay,et al. HY5, Circadian Clock-Associated 1, and a cis-Element, DET1 Dark Response Element, Mediate DET1 Regulation of Chlorophyll a/b-Binding Protein 2 Expression1 , 2003, Plant Physiology.
[86] Ali Shilatifard,et al. Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8. , 2003, Genes & development.
[87] G. Orphanides,et al. FACT Facilitates Transcription-Dependent Nucleosome Alteration , 2003, Science.
[88] M. Thomashow,et al. Disruption Mutations of ADA2b and GCN5 Transcriptional Adaptor Genes Dramatically Affect Arabidopsis Growth, Development, and Gene Expression Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.007922. , 2003, The Plant Cell Online.
[89] Hongyu Zhao,et al. Analysis of the mutational effects of the COP/DET/FUS loci on genome expression profiles reveals their overlapping yet not identical roles in regulating Arabidopsis seedling development , 2003, Development.
[90] G. Benvenuto,et al. The Photomorphogenesis Regulator DET1 Binds the Amino-Terminal Tail of Histone H2B in a Nucleosome Context , 2002, Current Biology.
[91] J. Ecker,et al. De-Etiolated 1 and Damaged DNA Binding Protein 1 Interact to Regulate Arabidopsis Photomorphogenesis , 2002, Current Biology.
[92] V. Orlando,et al. The maternal effect gene, abnormal oocyte (abo), of Drosophila melanogaster encodes a specific negative regulator of histones , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[93] B. Chait,et al. Human STAGA Complex Is a Chromatin-Acetylating Transcription Coactivator That Interacts with Pre-mRNA Splicing and DNA Damage-Binding Factors In Vivo , 2001, Molecular and Cellular Biology.
[94] D. Ware,et al. Seed and molecular resources for Arabidopsis. , 2000, Plant physiology.
[95] Xing Wang Deng,et al. Targeted destabilization of HY5 during light-regulated development of Arabidopsis , 2000, Nature.
[96] S. Clough,et al. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. , 1998, The Plant journal : for cell and molecular biology.
[97] R Ohba,et al. Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: characterization of an Ada complex and the SAGA (Spt/Ada) complex. , 1997, Genes & development.
[98] G. Jürgens,et al. The FUSCA genes of Arabidopsis: negative regulators of light responses , 1994, Molecular and General Genetics MGG.
[99] J. Chory,et al. DET1, a negative regulator of light-mediated development and gene expression in arabidopsis, encodes a novel nuclear-localized protein , 1994, Cell.
[100] F. Ausubel,et al. Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light , 1989, Cell.
[101] J. Doonan,et al. An actin network is present in the cytoplasm throughout the cell cycle of carrot cells and associates with the dividing nucleus , 1987, The Journal of cell biology.
[102] R. Solano,et al. Pull-down analysis of interactions among jasmonic acid core signaling proteins. , 2013, Methods in molecular biology.
[103] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[104] Ira M. Hall,et al. BEDTools: a flexible suite of utilities for comparing genomic features , 2010, Bioinform..
[105] S. Berger,et al. The histone H2B-specific ubiquitin ligase RNF20/hBRE1 acts as a putative tumor suppressor through selective regulation of gene expression. , 2008, Genes & development.
[106] Alex E. Lash,et al. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..