Crystal structure of the human TβR2 ectodomain–TGF-β3 complex

Transforming growth factor-β (TGF-β) is the prototype of a large family of structurally related cytokines that play key roles in maintaining cellular homeostasis by signaling through two classes of functionally distinct Ser/Thr kinase receptors, designated as type I and type II. TGF-β initiates receptor assembly by binding with high affinity to the type II receptor. Here, we present the 2.15 Å crystal structure of the extracellular ligand-binding domain of the human TGF-β type II receptor (ecTβR2) in complex with human TGF-β3. ecTβR2 interacts with homodimeric TGF-β3 by binding identical finger segments at opposite ends of the growth factor. Relative to the canonical 'closed' conformation previously observed in ligand structures across the superfamily, ecTβR2-bound TGF-β3 shows an altered arrangement of its monomeric subunits, designated the 'open' conformation. The mode of TGF-β3 binding shown by ecTβR2 is compatible with both ligand conformations. This, in addition to the predicted mode for TGF-β binding to the type I receptor ectodomain (ecTβR1), suggests an assembly mechanism in which ecTβR1 and ecTβR2 bind at adjacent positions on the ligand surface and directly contact each other via protein–protein interactions.

[1]  G. Cohen Align : A program to superimpose protein coordinates, accounting for insertions and deletions , 1997 .

[2]  D. Davies,et al.  Crystal structure of TGF‐β2 refined at 1.8 Å resolution , 1993 .

[3]  J. Massagué TGF-beta signal transduction. , 1998, Annual review of biochemistry.

[4]  W N Hunter,et al.  Structure of trypanothione reductase from Crithidia fasciculata at 2.6 A resolution; enzyme-NADP interactions at 2.8 A resolution. , 1994, Acta crystallographica. Section D, Biological crystallography.

[5]  R. Read Improved Fourier Coefficients for Maps Using Phases from Partial Structures with Errors , 1986 .

[6]  S. Choe,et al.  Three-finger toxin fold for the extracellular ligand-binding domain of the type II activin receptor serine kinase. , 1999, Nature Structural Biology.

[7]  Thomas C. Terwilliger,et al.  Automated MAD and MIR structure solution , 1999, Acta crystallographica. Section D, Biological crystallography.

[8]  R. Derynck,et al.  Ligand-independent Activation of Transforming Growth Factor (TGF) β Signaling Pathways by Heteromeric Cytoplasmic Domains of TGF-β Receptors* , 1996, The Journal of Biological Chemistry.

[9]  Z. Otwinowski,et al.  [20] Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[10]  K. Sharp,et al.  Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons , 1991, Proteins.

[11]  P. Kraulis A program to produce both detailed and schematic plots of protein structures , 1991 .

[12]  W. Kabsch,et al.  Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features , 1983, Biopolymers.

[13]  M. Grütter,et al.  The crystal structure of TGF‐β3 and comparison to TGF‐β2: Implications for receptor binding , 1996, Protein science : a publication of the Protein Society.

[14]  R M Esnouf,et al.  Further additions to MolScript version 1.4, including reading and contouring of electron-density maps. , 1999, Acta crystallographica. Section D, Biological crystallography.

[15]  T. Kirsch,et al.  Crystal structure of the BMP-2–BRIA ectodomain complex , 2000, Nature Structural Biology.

[16]  M. Sporn,et al.  Transforming growth factor beta 1: three-dimensional structure in solution and comparison with the X-ray structure of transforming growth factor beta 2. , 1996, Biochemistry.

[17]  M. Ultsch,et al.  The X-ray structure of a growth hormone–prolactin receptor complex , 1994, Nature.

[18]  A. Hinck,et al.  Letter to the Editor: Sequential resonance assignments of the extracellular ligand binding domain of the human TGF-β type II receptor , 2000 .

[19]  J. Massagué,et al.  Complementation between kinase‐defective and activation‐defective TGF‐beta receptors reveals a novel form of receptor cooperativity essential for signaling. , 1996, The EMBO journal.

[20]  M. Grütter,et al.  Refined Crystal Structure of Human Transforming Growth Factor β2 at 1·5 Å Resolution , 1993 .

[21]  K. Miyazono,et al.  Cloning and characterization of a human type II receptor for bone morphogenetic proteins. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[22]  Charles Eigenbrot,et al.  X-ray structure of glial cell-derived neurotrophic factor at 1.9 Å resolution and implications for receptor binding , 1997, Nature Structural Biology.

[23]  T. Kirsch,et al.  BMP‐2 antagonists emerge from alterations in the low‐affinity binding epitope for receptor BMPR‐II , 2000, The EMBO journal.

[24]  M. Ultsch,et al.  Human growth hormone and extracellular domain of its receptor: crystal structure of the complex. , 1992, Science.

[25]  M. Sporn,et al.  Binding Affinity of Transforming Growth Factor-β for Its Type II Receptor Is Determined by the C-terminal Region of the Molecule* , 1996, The Journal of Biological Chemistry.

[26]  C. Donaldson,et al.  Identification of a Binding Site on the Type II Activin Receptor for Activin and Inhibin* , 2000, The Journal of Biological Chemistry.

[27]  A. Arseniev,et al.  Letter to the Editor: Sequence-specific 1H and 15N assignment and secondary structure of transforming growth factor β3 , 2000 .

[28]  London P. Cuatrecasas Peptide Growth Factors and Their Receptors I , 1990, Handbook of Experimental Pharmacology.

[29]  J. Zou,et al.  Improved methods for building protein models in electron density maps and the location of errors in these models. , 1991, Acta crystallographica. Section A, Foundations of crystallography.

[30]  M. Grütter,et al.  An unusual feature revealed by the crystal structure at 2.2 Å resolution of human transforming growth fact or-β2 , 1992, Nature.

[31]  D. Huylebroeck,et al.  Identification of Two Amino Acids in Activin A That Are Important for Biological Activity and Binding to the Activin Type II Receptors* , 1999, The Journal of Biological Chemistry.

[32]  Anita B. Roberts,et al.  Peptide Growth Factors and Their Receptors I , 1990, Springer Study Edition.

[33]  M. Sporn,et al.  Mutational analysis of a transforming growth factor-beta receptor binding site. , 1998, Growth factors.

[34]  W. Sebald,et al.  Crystal structure of human bone morphogenetic protein-2 at 2.7 A resolution. , 1999, Journal of molecular biology.

[35]  S. Noji,et al.  Identification of a Human Type II Receptor for Bone Morphogenetic Protein-4 That Forms Differential Heteromeric Complexes with Bone Morphogenetic Protein Type I Receptors (*) , 1995, The Journal of Biological Chemistry.

[36]  R J Read,et al.  Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.

[37]  Hong-Jian Zhu,et al.  Extracellular Domain of the Transforming Growth Factor-β Receptor Negatively Regulates Ligand-independent Receptor Activation* , 1999, The Journal of Biological Chemistry.

[38]  Jeffrey L. Wrana,et al.  Mechanism of activation of the TGF-β receptor , 1994, Nature.

[39]  D. Davies,et al.  Crystal structure of transforming growth factor-beta 2: an unusual fold for the superfamily. , 1992, Science.

[40]  D. L. Griffith,et al.  Three-dimensional structure of recombinant human osteogenic protein 1: structural paradigm for the transforming growth factor beta superfamily. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[41]  Tudor Arvinte,et al.  Conformation and Self-association of Human Recombinant Transforming Growth Factor-β3 in Aqueous Solutions* , 1999, The Journal of Biological Chemistry.