Kinetic consequences of the removal of a disulfide bridge on the folding of hen lysozyme.

Quenched-flow hydrogen exchange labeling, monitored by 1H NMR and electrospray ionization mass spectrometry (ESI-MS), has been employed in conjunction with stopped-flow circular dichroism and fluorescence to study the kinetic refolding from guanidinium chloride of a derivative of hen lysozyme in which one of the four disulfide linkages (Cys6-Cys127) has been selectively chemically reduced and carboxymethylated (CM6,127-lysozyme). Removal of this disulfide bridge has little effect on the structure and activity of the native enzyme, and the overall kinetics of refolding are very similar to those of the unmodified protein. A substantial amount of secondary structure is formed within 2 ms of the initiation of folding, followed by the slower formation of tertiary interactions characteristic of the native state, which are attained with a time constant (tau) of ca. 200 ms. There is clear evidence for fast and slow refolding populations, as in the intact protein. Folding of the three-disulfide derivative does, however, exhibit a major difference from that of the intact protein under the same final refolding conditions, in that the transient intermediate on the major refolding pathway of the intact protein, having persistent structure in the alpha-helical domain of the protein, is not detected by hydrogen exchange labeling during folding of the three-disulfide derivative. This suggests that the disulfide bond linking the N- and C-terminal regions of the protein is crucial for stabilization of the partially folded intermediate. In addition, the overshoot in the far-UV CD and the fluorescence minimum, both of which are attributed to non-native interactions, is not observed in the folding of CM6,127-lysozyme. That the lack of a detectable stable intermediate in the folding of CM6,127-lysozyme does not significantly affect the rate of attainment of the native state of the protein supports the proposed independent nature of the two folding domains and, as the Cys6-Cys127 disulfide bond is located in the alpha-domain, indicates that the rate-limiting step in folding of the intact protein, as well as of the three-disulfide derivative, involves stabilization of the beta-domain. The role of disulfide bridges in the formation and maintenance of the three-dimensional fold of proteins and in facilitating the observation of marginally stable intermediate species is discussed.

[1]  Protein internal flexibility and global stability: effect of urea on hydrogen exchange rates of bovine pancreatic trypsin inhibitor. , 1993, Biochemistry.

[2]  C. Dobson,et al.  Mechanisms of hydrogen exchange in proteins from nuclear magnetic resonance studies of individual tryptophan indole NH hydrogens in lysozyme. , 1982, Biochemistry.

[3]  C. Dobson,et al.  A three-disulphide derivative of hen lysozyme. Structure, dynamics and stability. , 1991, The Biochemical journal.

[4]  A. Fersht,et al.  Protein folding and stability: the pathway of folding of barnase , 1993 .

[5]  K. Kuwajima,et al.  Comparison of the transient folding intermediates in lysozyme and alpha-lactalbumin. , 1985, Biochemistry.

[6]  R. R. Ernst,et al.  Two‐dimensional spectroscopy. Application to nuclear magnetic resonance , 1976 .

[7]  C. Dobson,et al.  Tertiary interactions in the folding pathway of hen lysozyme: kinetic studies using fluorescent probes. , 1994, Biochemistry.

[8]  R. Heinrikson,et al.  Amino acid analysis by reverse-phase high-performance liquid chromatography: precolumn derivatization with phenylisothiocyanate. , 1984, Analytical biochemistry.

[9]  C. Hill,et al.  Crystal structure of a ubiquitin-dependent degradation substrate: a three-disulfide form of lysozyme. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[10]  A. Chaffotte,et al.  Kinetic resolution of peptide bond and side chain far-UV circular dichroism during the folding of hen egg white lysozyme. , 1992, Biochemistry.

[11]  T. Creighton,et al.  Structural characterization of the disulfide folding intermediates of bovine alpha-lactalbumin. , 1993, Biochemistry.

[12]  S. Walter Englander,et al.  Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR , 1988, Nature.

[13]  C M Dobson,et al.  Understanding how proteins fold: the lysozyme story so far. , 1994, Trends in biochemical sciences.

[14]  P E Wright,et al.  Formation of a molten globule intermediate early in the kinetic folding pathway of apomyoglobin. , 1993, Science.

[15]  Clare Woodward,et al.  Hydrogen exchange rates and protein folding , 1994 .

[16]  H. Scheraga,et al.  Spectroscopic, immunochemical, and thermodynamic properties of carboxymethyl(Cys6, Cys127)-hen egg white lysozyme , 1991, Journal of protein chemistry.

[17]  T. Creighton,et al.  The disulfide folding pathway of BPTI. , 1992, Science.

[18]  S. Khorasanizadeh,et al.  Folding and stability of a tryptophan-containing mutant of ubiquitin. , 1993, Biochemistry.

[19]  Dudley H. Williams,et al.  Characterization of a partially denatured state of a protein by two-dimensional NMR: reduction of the hydrophobic interactions in ubiquitin. , 1991, Biochemistry.

[20]  O. Ptitsyn,et al.  Evidence for a molten globule state as a general intermediate in protein folding , 1990, FEBS letters.

[21]  F M Poulsen,et al.  A nuclear magnetic resonance study of the hydrogen-exchange behaviour of lysozyme in crystals and solution. , 1991, Journal of molecular biology.

[22]  K. Kuwajima,et al.  Evidence for identity between the equilibrium unfolding intermediate and a transient folding intermediate: a comparative study of the folding reactions of alpha-lactalbumin and lysozyme. , 1986, Biochemistry.

[23]  D. Wetlaufer,et al.  The folding pathway of reduced lysozyme. , 1976, The Journal of biological chemistry.

[24]  C. Dobson,et al.  The refolding of human lysozyme: a comparison with the structurally homologous hen lysozyme. , 1994, Biochemistry.

[25]  A M Gronenborn,et al.  Kinetics of folding of the all-beta sheet protein interleukin-1 beta. , 1993, Science.

[26]  K. Kuwajima Protein folding in vitro. , 1992, Current opinion in biotechnology.

[27]  Yawen Bai,et al.  Primary structure effects on peptide group hydrogen exchange , 1993, Biochemistry.

[28]  C. Dobson,et al.  A partially folded state of hen egg white lysozyme in trifluoroethanol: structural characterization and implications for protein folding. , 1993, Biochemistry.

[29]  D. F. Koenig,et al.  Structure of Hen Egg-White Lysozyme: A Three-dimensional Fourier Synthesis at 2 Å Resolution , 1965, Nature.

[30]  J. Baum,et al.  Structural characterization of monellin in the alcohol-denatured state by NMR: evidence for beta-sheet to alpha-helix conversion. , 1993, Biochemistry.

[31]  C. Dobson,et al.  Thermodynamic consequences of the removal of a disulphide bridge from hen lysozyme. , 1992, Journal of molecular biology.

[32]  P E Wright,et al.  Structural characterization of a partly folded apomyoglobin intermediate. , 1990, Science.

[33]  S. Radford,et al.  Probing the structure of folding intermediates , 1994 .

[34]  P. Alexander,et al.  An engineered disulfide cross-link accelerates the refolding rate of calcium-free subtilisin by 850-fold. , 1993, Biochemistry.

[35]  N. Shimamoto,et al.  Identification and characterization of the direct folding process of hen egg-white lysozyme. , 1982, Biochemistry.

[36]  A. Fersht,et al.  Engineered disulfide bonds as probes of the folding pathway of barnase: increasing the stability of proteins against the rate of denaturation. , 1993, Biochemistry.

[37]  A. Fersht,et al.  Principles of protein stability derived from protein engineering experiments , 1993 .

[38]  K. Kuwajima,et al.  Contribution of the 6-120 disulfide bond of alpha-lactalbumin to the stabilities of its native and molten globule states. , 1992, Biochemistry.

[39]  K. Dill,et al.  Cooperativity in protein-folding kinetics. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[40]  B. Lee,et al.  The interpretation of protein structures: estimation of static accessibility. , 1971, Journal of molecular biology.

[41]  B. Matthews Structural and genetic analysis of protein folding and stability: Current Opinion in Sturctural Biology 1993, 3:589–593 , 1993 .

[42]  C M Dobson,et al.  Characterization of a partly folded protein by NMR methods: studies on the molten globule state of guinea pig alpha-lactalbumin. , 1989, Biochemistry.

[43]  Robert L. Baldwin,et al.  NMR evidence for an early framework intermediate on the folding pathway of ribonuclease A , 1988, Nature.

[44]  H. Noller,et al.  Ribosomal proteins of Escherichia coli. II. Proteins from the 30 s subunit. , 1968, Journal of molecular biology.

[45]  R. Jaenicke Role of accessory proteins in protein folding , 1993 .

[46]  A. Chaffotte,et al.  Early steps in cytochrome c folding probed by time-resolved circular dichroism and fluorescence spectroscopy. , 1992, Biochemistry.

[47]  J. A. Rupley,et al.  Oxidation of lysozyme by iodine: identification and properties of an oxindolyl ester intermediate: evidence for participation of glutamic acid 35 in catalysis. , 1973, Journal of molecular biology.

[48]  C. Dobson,et al.  Detection of transient protein folding populations by mass spectrometry. , 1993, Science.

[49]  C. Dobson,et al.  Hydrogen exchange in native and denatured states of hen egg‐white lysozyme , 1992, Proteins.

[50]  J. A. Rupley,et al.  Fluorescence of lysozyme: emissions from tryptophan residues 62 and 108 and energy migration. , 1972, Proceedings of the National Academy of Sciences of the United States of America.

[51]  H. Yamada,et al.  Nature of the binding site around and reactivity of histidine-15 in lysozyme. , 1984, Journal of biochemistry.

[52]  W. Goux,et al.  The chiroptical properties of proteins. II. Near‐ultraviolet circular dichroism of lysozyme , 1980, Biopolymers.

[53]  Secondary structure of globular proteins at the early and the final stages in protein folding , 1993, FEBS letters.

[54]  C. Dobson,et al.  The folding of hen lysozyme involves partially structured intermediates and multiple pathways , 1992, Nature.

[55]  P. Kraulis A program to produce both detailed and schematic plots of protein structures , 1991 .

[56]  C Redfield,et al.  Structure of hen lysozyme in solution. , 1993, Journal of molecular biology.

[57]  C. Dobson,et al.  Sequential 1H NMR assignments and secondary structure of hen egg white lysozyme in solution. , 1988, Biochemistry.

[58]  N. Shimamoto,et al.  Spectral evidence for a rapidly formed structural intermediate in the refolding kinetics of hen egg-white lysozyme. , 1981, Biochemistry.

[59]  R. L. Baldwin Pulsed H/D-exchange studies of folding intermediates , 1993 .