Interorgan Coordination of the Murine Adaptive Response to Fasting*

Starvation elicits a complex adaptive response in an organism. No information on transcriptional regulation of metabolic adaptations is available. We, therefore, studied the gene expression profiles of brain, small intestine, kidney, liver, and skeletal muscle in mice that were subjected to 0–72 h of fasting. Functional-category enrichment, text mining, and network analyses were employed to scrutinize the overall adaptation, aiming to identify responsive pathways, processes, and networks, and their regulation. The observed transcriptomics response did not follow the accepted “carbohydrate-lipid-protein” succession of expenditure of energy substrates. Instead, these processes were activated simultaneously in different organs during the entire period. The most prominent changes occurred in lipid and steroid metabolism, especially in the liver and kidney. They were accompanied by suppression of the immune response and cell turnover, particularly in the small intestine, and by increased proteolysis in the muscle. The brain was extremely well protected from the sequels of starvation. 60% of the identified overconnected transcription factors were organ-specific, 6% were common for 4 organs, with nuclear receptors as protagonists, accounting for almost 40% of all transcriptional regulators during fasting. The common transcription factors were PPARα, HNF4α, GCRα, AR (androgen receptor), SREBP1 and -2, FOXOs, EGR1, c-JUN, c-MYC, SP1, YY1, and ETS1. Our data strongly suggest that the control of metabolism in four metabolically active organs is exerted by transcription factors that are activated by nutrient signals and serves, at least partly, to prevent irreversible brain damage.

[1]  Gordon K Smyth,et al.  Statistical Applications in Genetics and Molecular Biology Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments , 2011 .

[2]  Rob Jelier,et al.  CoPub Mapper: mining MEDLINE based on search term co-publication , 2005, BMC Bioinformatics.

[3]  Sean Ekins,et al.  A NOVEL METHOD FOR VISUALIZING NUCLEAR HORMONE RECEPTOR NETWORKS RELEVANT TO DRUG METABOLISM , 2005, Drug Metabolism and Disposition.

[4]  W. Bortz,et al.  Ketone-body production and oxidation in fasting obese humans. , 1974, The Journal of clinical investigation.

[5]  Academisch Proefschrift,et al.  The transcriptomic signature of fasting , 2008 .

[6]  A. Goldberg,et al.  Multiple types of skeletal muscle atrophy involve a common program of changes in gene expression , 2004, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[7]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[8]  T. Vanitallie,et al.  Ketones: metabolism's ugly duckling. , 2003, Nutrition reviews.

[9]  K. Grove,et al.  Metabolic adaptations in skeletal muscle during lactation: complementary deoxyribonucleic acid microarray and real-time polymerase chain reaction analysis of gene expression. , 2004, Endocrinology.

[10]  Catherine Mounier,et al.  Transcriptional regulation by insulin: from the receptor to the gene. , 2006, Canadian journal of physiology and pharmacology.

[11]  R. Veech The therapeutic implications of ketone bodies: the effects of ketone bodies in pathological conditions: ketosis, ketogenic diet, redox states, insulin resistance, and mitochondrial metabolism. , 2004, Prostaglandins, leukotrienes, and essential fatty acids.

[12]  P. J. Randle,et al.  Glucose fatty acid interactions and the regulation of glucose disposal , 1994, Journal of cellular biochemistry.

[13]  F. Hegardt Mitochondrial 3-hydroxy-3-methylglutaryl-CoA synthase: a control enzyme in ketogenesis. , 1999, The Biochemical journal.

[14]  D. D’Alessio,et al.  Protein, fat, and carbohydrate requirements during starvation: anaplerosis and cataplerosis. , 1998, The American journal of clinical nutrition.

[15]  C. Habold,et al.  Intestinal gluconeogenesis and glucose transport according to body fuel availability in rats , 2005, The Journal of physiology.

[16]  Maurice Bouwhuis,et al.  CoPub: a literature-based keyword enrichment tool for microarray data analysis , 2008, Nucleic Acids Res..

[17]  Emiel Ver Loren van Themaat,et al.  The transcriptomic signature of fasting murine liver , 2008, BMC Genomics.

[18]  M. Sigler The mechanism of the natriuresis of fasting. , 1975, The Journal of clinical investigation.

[19]  F. Maxfield,et al.  Role of cholesterol and lipid organization in disease , 2005, Nature.

[20]  A. Fukamizu,et al.  A Combination of HNF-4 and Foxo1 Is Required for Reciprocal Transcriptional Regulation of Glucokinase and Glucose-6-phosphatase Genes in Response to Fasting and Feeding* , 2008, Journal of Biological Chemistry.

[21]  A. Brunet,et al.  FoxO transcription factors in the maintenance of cellular homeostasis during aging. , 2008, Current opinion in cell biology.

[22]  G F Cahill,et al.  Brain metabolism during fasting. , 1967, The Journal of clinical investigation.

[23]  A. Kenworthy,et al.  Molecular consequences of altered neuronal cholesterol biosynthesis , 2009, Journal of neuroscience research.

[24]  Yuri Nikolsky,et al.  Integrated network analysis of transcriptomic and proteomic data in psoriasis , 2010, BMC Systems Biology.

[25]  Kevin Dobbin,et al.  Comparison of microarray designs for class comparison and class discovery , 2002, Bioinform..

[26]  George F Cahill,et al.  Fuel metabolism in starvation. , 2006, Annual review of nutrition.

[27]  M. Caloin Modeling of lipid and protein depletion during total starvation. , 2004, American journal of physiology. Endocrinology and metabolism.

[28]  A. Garber,et al.  Hepatic ketogenesis and gluconeogenesis in humans. , 1974, The Journal of clinical investigation.

[29]  P. Angel,et al.  AP-1 subunits: quarrel and harmony among siblings , 2004, Journal of Cell Science.

[30]  L. Kenner,et al.  Translational regulation mechanisms of AP-1 proteins. , 2009, Mutation research.

[31]  A. Goldberg,et al.  Patterns of gene expression in atrophying skeletal muscles: response to food deprivation , 2002, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[32]  P. Finn,et al.  Proteolytic and lipolytic responses to starvation. , 2006, Nutrition.

[33]  Y. Maho,et al.  Whole-body and tissue protein synthesis during brief and prolonged fasting in the rat. , 1991, Clinical science.

[34]  P. Coffer,et al.  FOXO-binding partners: it takes two to tango , 2008, Oncogene.

[35]  T. Nikolskaya,et al.  Biological networks and analysis of experimental data in drug discovery. , 2005, Drug discovery today.

[36]  M. Sokolovic,et al.  Unexpected effects of fasting on murine lipid homeostasis--transcriptomic and lipid profiling. , 2010, Journal of hepatology.

[37]  P. Morell,et al.  Cholesterol for Synthesis of Myelin Is Made Locally, Not Imported into Brain , 1995, Journal of neurochemistry.

[38]  M. Langeveld,et al.  Glycosphingolipids and insulin resistance. , 2009, Progress in lipid research.

[39]  Gipsy Majumdar,et al.  A critical role of Sp1 transcription factor in regulating gene expression in response to insulin and other hormones. , 2008, Life sciences.

[40]  M. Zajac-Kaye,et al.  Myc oncogene: a key component in cell cycle regulation and its implication for lung cancer. , 2001, Lung cancer.

[41]  P. Felig,et al.  Liver and kidney metabolism during prolonged starvation. , 1969, The Journal of clinical investigation.

[42]  C. Habold,et al.  Intestinal apoptotic changes linked to metabolic status in fasted and refed rats , 2006, Pflügers Archiv.

[43]  Xiaobo Li,et al.  Overexpression of mitochondrial cholesterol delivery protein, StAR, decreases intracellular lipids and inflammatory factors secretion in macrophages. , 2009, Atherosclerosis.

[44]  F. Hegardt Transcriptional regulation of mitochondrial HMG-CoA synthase in the control of ketogenesis. , 1998, Biochimie.

[45]  R. O’Brien,et al.  Regulation of Phosphoenolpyruvate Carboxykinase and Insulin-like Growth Factor-binding Protein-1 Gene Expression by Insulin , 2000, The Journal of Biological Chemistry.

[46]  A. Brunet,et al.  FOXO transcription factors , 2007, Current Biology.

[47]  Tatiana Nikolskaya,et al.  Functional analysis of OMICs data and small molecule compounds in an integrated "knowledge-based" platform. , 2009, Methods in molecular biology.

[48]  G. Radda,et al.  FoxO1 Inhibits Leptin Regulation of Pro-opiomelanocortin Promoter Activity by Blocking STAT3 Interaction with Specificity Protein 1* , 2009, Journal of Biological Chemistry.

[49]  G F Cahill,et al.  Amino acid metabolism during prolonged starvation. , 1969, The Journal of clinical investigation.

[50]  Ivan Rusyn,et al.  Genome‐level analysis of genetic regulation of liver gene expression networks , 2007, Hepatology.

[51]  T. Breit,et al.  Finding transcriptomics biomarkers for in vivo identification of (non-)genotoxic carcinogens using wild-type and Xpa/p53 mutant mouse models. , 2009, Carcinogenesis.

[52]  K. Arden FOXO animal models reveal a variety of diverse roles for FOXO transcription factors , 2008, Oncogene.

[53]  Jean YH Yang,et al.  Bioconductor: open software development for computational biology and bioinformatics , 2004, Genome Biology.

[54]  Levon M. Khachigian,et al.  Sp1 Phosphorylation and Its Regulation of Gene Transcription , 2009, Molecular and Cellular Biology.

[55]  S. Anderson,et al.  Integration of Smad and Forkhead Pathways in the Control of Neuroepithelial and Glioblastoma Cell Proliferation , 2004, Cell.

[56]  F. Blasi,et al.  The urokinase receptor as an entertainer of signal transduction. , 2009, Frontiers in bioscience.

[57]  Antonio Vidal-Puig,et al.  An allostatic control of membrane lipid composition by SREBP1 , 2010, FEBS letters.

[58]  P. Felig,et al.  Amino acid metabolism in the regulation of gluconeogenesis in man. , 1970, The American journal of clinical nutrition.

[59]  Min-Seon Kim,et al.  Role of hypothalamic Foxo1 in the regulation of food intake and energy homeostasis , 2006, Nature Neuroscience.

[60]  Jayoung Kim,et al.  Transit of hormonal and EGF receptor-dependent signals through cholesterol-rich membranes , 2007, Steroids.

[61]  S. Kandarian,et al.  Intracellular signaling during skeletal muscle atrophy , 2006, Muscle & nerve.

[62]  Hubert Schorle,et al.  Starvation response in mouse liver shows strong correlation with life-span-prolonging processes. , 2004, Physiological genomics.

[63]  W. Wahli,et al.  Transcriptional regulation of metabolism. , 2006, Physiological reviews.

[64]  M. Monsalve,et al.  Mutual dependence of Foxo3a and PGC-1alpha in the induction of oxidative stress genes. , 2009, The Journal of biological chemistry.

[65]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[66]  D. Tindall,et al.  Androgen regulation of gene expression. , 2010, Advances in cancer research.

[67]  L. Ivashkiv,et al.  Glucocorticoid modulation of cytokine signaling. , 2006, Tissue antigens.

[68]  Alex E. Lash,et al.  Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..

[69]  P. Södersten,et al.  Understanding eating disorders , 2006, Hormones and Behavior.

[70]  T. Kadowaki,et al.  Adiponectin and adiponectin receptors. , 2005, Endocrine reviews.

[71]  J. Henriksson The possible role of skeletal muscle in the adaptation to periods of energy deficiency. , 1990, European journal of clinical nutrition.

[72]  J. Ruijter,et al.  Glutamine Synthetase in Muscle Is Required for Glutamine Production during Fasting and Extrahepatic Ammonia Detoxification* , 2010, The Journal of Biological Chemistry.

[73]  M. Taouis,et al.  Adiponectin receptors are expressed in hypothalamus and colocalized with proopiomelanocortin and neuropeptide Y in rodent arcuate neurons. , 2009, The Journal of endocrinology.

[74]  G. Mithieux The new functions of the gut in the control of glucose homeostasis , 2005, Current opinion in clinical nutrition and metabolic care.

[75]  J. Diamond,et al.  The double puzzle of diabetes , 2003, Nature.

[76]  Gordon K. Smyth,et al.  A comparison of background correction methods for two-colour microarrays , 2007, Bioinform..

[77]  Robert W. Williams,et al.  Identification of the UBP1 Locus as a Critical Blood Pressure Determinant Using a Combination of Mouse and Human Genetics , 2009, PLoS genetics.

[78]  S. Lecker,et al.  Ubiquitin-protein ligases in muscle wasting. , 2005, The international journal of biochemistry & cell biology.

[79]  B. Wallner,et al.  The evolution of violence in men: The function of central cholesterol and serotonin , 2009, Progress in Neuro-Psychopharmacology and Biological Psychiatry.

[80]  W. Alkema,et al.  Literature-based compound profiling: application to toxicogenomics. , 2007, Pharmacogenomics.

[81]  Y. Yeh,et al.  Temporal changes in plasma levels and metabolism of ketone bodies by liver and brain after ethanol and/or starvation in C57BL/6J mice. , 1984, Drug and alcohol dependence.

[82]  R. Auer Hypoglycemic brain damage. , 2004, Metabolic brain disease.