Synonymous codon selection controls in vivo turnover and amount of mRNA in Escherichia coli bla and ompA genes

A number of silent codon changes were made in two Escherichia coli genes. For the ompA gene, the replacement of seven consecutive frequently used codons with synonymous infrequently used codons reduced the ompA mRNA level and its half-life. For the bla gene, the exchange of 24 codons for the most frequently used synonymous codons extended the bla mRNA half-life. A modification of ribosome traffic could account for these observations.

[1]  J. Belasco,et al.  Mechanisms of mRNA decay in bacteria: a perspective. , 1988, Gene.

[2]  S. Cole,et al.  Isolation and characterization of mutants deleted for the sulA-ompA region of the Escherichia coli K-12 chromosome , 1986 .

[3]  P. V. von Hippel,et al.  Interactions of Escherichia coli transcription termination factor rho with RNA. II. Electron microscopy and nuclease protection experiments. , 1988, Journal of molecular biology.

[4]  R. Lloubès,et al.  Translation is a non-uniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains. , 1984, Journal of molecular biology.

[5]  C. Kurland,et al.  Strategies for efficiency and accuracy in gene expression , 1987 .

[6]  M. Sørensen,et al.  Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate. , 1991, Journal of molecular biology.

[7]  Thomas A. Kunkel,et al.  Rapid and efficient site-specific mutagenesis without phenotypic selection. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[8]  M. Dreyfus,et al.  The stability of Escherichia coli lacZ mRNA depends upon the simultaneity of its synthesis and translation. , 1995, The EMBO journal.

[9]  J. Richardson Preventing the synthesis of unused transcripts by rho factor , 1991, Cell.

[10]  M. Deutscher E. coli RNases: Making sense of alphabet soup , 1985, Cell.

[11]  J. Belasco,et al.  Decay of mRNA in Escherichia coli: investigation of the fate of specific segments of transcripts. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[12]  S. Pedersen Escherichia coli ribosomes translate in vivo with variable rate. , 1984, The EMBO journal.

[13]  M Yarus,et al.  Codon contexts from weakly expressed genes reduce expression in vivo. , 1989, Journal of molecular biology.

[14]  J. Richardson Transcription termination. , 1993, Critical reviews in biochemistry and molecular biology.

[15]  C. Kurland,et al.  Codon preferences in free-living microorganisms. , 1990, Microbiological reviews.

[16]  T. Kunkel Rapid and efficient site-specific mutagenesis without phenotypic selection. , 1985, Proceedings of the National Academy of Sciences of the United States of America.