Abdominal Adipose Tissue Segmentation in MRI with Double Loss Function Collaborative Learning

Deep learning has shown promising progress in computer-aided medical image diagnosis in recent years, such adipose tissue segmentation. Generally, training a high-performance deep segmentation model requires a large amount of labeled images. However, in clinical practice many labels are saved in numerical forms rather than image forms while relabelling images with manual segmentation is extremely time-consuming and laborious. To fill in this gap between numerical labels and image-based labels, we propose a novel double loss function to train an adipose segmentation model through collaborative learning. Specifically, the double loss function leverages a large volume of numerical labels available and a small volume of images labels. To validate our collaborative learning model, we collect one dataset of 300 high quality MR images with pixel-level segmentation labels and another dataset of 9000 clinical quantitative MR images with numerical labels of the number of pixels in subcutaneous adipose tissue (SAT), visceral adipose tissue (VAT), and Non-adipose tissues. Our approach achieves 94.3% and 90.8% segmentation accuracy for SAT and VAT respectively in the dataset with image labels, and 93.6% and 88.7% segmentation accuracy for the dataset with only numerical labels. The proposed approach can be generalize to a broad range of clinical problems with different types of ground truth labels.

[1]  Yoshihiko Takahashi,et al.  Associations of Visceral and Subcutaneous Fat Areas With the Prevalence of Metabolic Risk Factor Clustering in 6,292 Japanese Individuals , 2010, Diabetes Care.

[2]  Anders Forslund,et al.  Fully convolutional networks for automated segmentation of abdominal adipose tissue depots in multicenter water–fat MRI , 2018, Magnetic resonance in medicine.

[3]  Thomas Kahn,et al.  Software for automated MRI‐based quantification of abdominal fat and preliminary evaluation in morbidly obese patients , 2013, Journal of magnetic resonance imaging : JMRI.

[4]  Antonio Criminisi,et al.  Decision Forests: A Unified Framework for Classification, Regression, Density Estimation, Manifold Learning and Semi-Supervised Learning , 2012, Found. Trends Comput. Graph. Vis..

[5]  Cheng-Hao Tsai,et al.  Incremental and decremental training for linear classification , 2014, KDD.

[6]  Bin Sheng,et al.  Abdominal adipose tissues extraction using multi-scale deep neural network , 2017, Neurocomputing.

[7]  Qi Peng,et al.  Novel segmentation method for abdominal fat quantification by MRI , 2011, Journal of magnetic resonance imaging : JMRI.

[8]  Roberto Cipolla,et al.  SegNet: A Deep Convolutional Encoder-Decoder Architecture for Image Segmentation , 2015, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[9]  Suresh Anand Sadananthan,et al.  Automated segmentation of visceral and subcutaneous (deep and superficial) adipose tissues in normal and overweight men , 2015, Journal of magnetic resonance imaging : JMRI.

[10]  Thomas Brox,et al.  U-Net: Convolutional Networks for Biomedical Image Segmentation , 2015, MICCAI.

[11]  J. Després,et al.  Abdominal obesity and metabolic syndrome , 2006, Nature.