Nucleotide-dependent conformational changes in the DnaA-like core of the origin recognition complex

[1]  J. Berger,et al.  Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling , 2006, Nature Structural &Molecular Biology.

[2]  M. Botchan,et al.  Isolation of the Cdc45/Mcm2–7/GINS (CMG) complex, a candidate for the eukaryotic DNA replication fork helicase , 2006, Proceedings of the National Academy of Sciences.

[3]  M. Gossen,et al.  A structural role for ATP in the formation and stability of the human origin recognition complex. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[4]  Ricky D. Edmondson,et al.  GINS maintains association of Cdc45 with MCM in replisome progression complexes at eukaryotic DNA replication forks , 2006, Nature Cell Biology.

[5]  Pawel A Penczek,et al.  Cryo-electron microscopy studies of human TFIID: conformational breathing in the integration of gene regulatory cues. , 2006, Structure.

[6]  M. Pacek,et al.  Localization of MCM2-7, Cdc45, and GINS to the site of DNA unwinding during eukaryotic DNA replication. , 2006, Molecular cell.

[7]  Chao Yang,et al.  Estimation of variance in single-particle reconstruction using the bootstrap technique. , 2006, Journal of Structural Biology.

[8]  S. Bell,et al.  Sequential ATP hydrolysis by Cdc6 and ORC directs loading of the Mcm2-7 helicase. , 2006, Molecular cell.

[9]  Bruce Stillman,et al.  ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA , 2005, Nature Structural &Molecular Biology.

[10]  A. F. Neuwald.  Evolutionary clues to eukaryotic DNA clamp-loading mechanisms: analysis of the functional constraints imposed on replication factor C AAA+ ATPases , 2005, Nucleic acids research.

[11]  T. Katayama,et al.  Protein Associations in DnaA-ATP Hydrolysis Mediated by the Hda-Replicase Clamp Complex* , 2005, Journal of Biological Chemistry.

[12]  A. Leonard,et al.  Building a bacterial orisome: emergence of new regulatory features for replication origin unwinding , 2004, Molecular microbiology.

[13]  S. Bell,et al.  ATP hydrolysis by ORC catalyzes reiterative Mcm2-7 assembly at a defined origin of replication. , 2004, Molecular cell.

[14]  Conrad C. Huang,et al.  UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..

[15]  John Kuriyan,et al.  Structural analysis of a eukaryotic sliding DNA clamp–clamp loader complex , 2004, Nature.

[16]  Detlef D. Leipe,et al.  Evolutionary history and higher order classification of AAA+ ATPases. , 2004, Journal of structural biology.

[17]  M. Botchan,et al.  DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC–DNA binding , 2004, The EMBO journal.

[18]  Geoffrey J. Barton,et al.  The Jalview Java alignment editor , 2004, Bioinform..

[19]  J. Berger,et al.  Biochemical characterization of Cdc6/Orc1 binding to the replication origin of the euryarchaeon Methanothermobacter thermoautotrophicus. , 2004, Nucleic acids research.

[20]  Bruce Stillman,et al.  Perpetuating the double helix: molecular machines at eukaryotic DNA replication origins. , 2003, BioEssays : news and reviews in molecular, cellular and developmental biology.

[21]  Seok-Yong Lee,et al.  Regulation of the transcriptional activator NtrC1: structural studies of the regulatory and AAA+ ATPase domains. , 2003, Genes & development.

[22]  S. Vashee,et al.  Sequence-independent DNA binding and replication initiation by the human origin recognition complex. , 2003, Genes & development.

[23]  M. Botchan,et al.  A cytokinetic function of Drosophila ORC6 protein resides in a domain distinct from its replication activity , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[24]  J. Kuriyan,et al.  Motors and switches: AAA+ machines within the replisome , 2002, Nature Reviews Molecular Cell Biology.

[25]  J. Berger,et al.  The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation , 2002, The EMBO journal.

[26]  B. Stillman,et al.  Orc6 Involved in DNA Replication, Chromosome Segregation, and Cytokinesis , 2002, Science.

[27]  M. O’Donnell,et al.  The DnaC helicase loader is a dual ATP/ADP switch protein , 2002, The EMBO journal.

[28]  S. Bell,et al.  The origin recognition complex: from simple origins to complex functions. , 2002, Genes & development.

[29]  Joon-Kyu Lee,et al.  The Schizosaccharomyces pombe origin recognition complex interacts with multiple AT-rich regions of the replication origin DNA by means of the AT-hook domains of the spOrc4 protein , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[30]  M. Botchan,et al.  Functional analysis of mutant and wild-type Drosophila origin recognition complex , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[31]  S. Bell,et al.  ATP bound to the origin recognition complex is important for preRC formation , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[32]  M. Sternberg,et al.  Enhanced genome annotation using structural profiles in the program 3D-PSSM. , 2000, Journal of molecular biology.

[33]  S. Bell,et al.  ATPase switches controlling DNA replication initiation. , 2000, Current opinion in cell biology.

[34]  Liam J. McGuffin,et al.  The PSIPRED protein structure prediction server , 2000, Bioinform..

[35]  M. Botchan,et al.  Assembly of functionally active Drosophila origin recognition complex from recombinant proteins. , 1999, Genes & development.

[36]  J. Diffley,et al.  Nucleotide-dependent prereplicative complex assembly by Cdc6p, a homolog of eukaryotic and prokaryotic clamp-loaders. , 1998, Molecular cell.

[37]  M. Botchan,et al.  Association of the Origin Recognition Complex with Heterochromatin and HP1 in Higher Eukaryotes , 1997, Cell.

[38]  A Leith,et al.  SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. , 1996, Journal of structural biology.

[39]  M van Heel,et al.  A new generation of the IMAGIC image processing system. , 1996, Journal of structural biology.

[40]  J. Acharya,et al.  A Drosophila Homolog of the Yeast Origin Recognition Complex , 1995, Science.

[41]  G J Kleywegt,et al.  Detection, delineation, measurement and display of cavities in macromolecular structures. , 1994, Acta crystallographica. Section D, Biological crystallography.

[42]  J. Frank,et al.  The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles. , 1994, Ultramicroscopy.

[43]  Bruce Stillman,et al.  ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex , 1992, Nature.

[44]  T. Baker,et al.  Strand separation required for initiation of replication at the chromosomal origin of E.coli is facilitated by a distant RNA–DNA hybrid. , 1990, The EMBO journal.

[45]  T. Baker,et al.  Transcriptional activation of initiation of replication from the E. coli chromosomal origin: An RNA-DNA hybrid near oriC , 1988, Cell.

[46]  Arthur Kornberg,et al.  A model for initiation at origins of DNA replication , 1988, Cell.

[47]  M. Radermacher,et al.  Three-dimensional reconstruction of single particles from random and nonrandom tilt series. , 1988, Journal of electron microscopy technique.

[48]  A. Kornberg,et al.  Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome , 1988, Cell.

[49]  A. Kornberg,et al.  Purified dnaA protein in initiation of replication at the Escherichia coli chromosomal origin of replication. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[50]  W. O. Saxton,et al.  The correlation averaging of a regularly arranged bacterial cell envelope protein , 1982, Journal of microscopy.