Microbial diversity in biodegradation and reutilization processes of garbage.

With particular focus on the microbial diversity in garbage treatment, the current status of garbage treatment in Japan and microbial ecological studies on various bioprocesses for garbage treatment are described in detail. The future direction of research in this field is also discussed.

[1]  J. D. Elsas,et al.  Molecular Microbial Ecology Manual , 2013, Springer Netherlands.

[2]  S. Haruta,et al.  Cerasibacillus quisquiliarum gen. nov., sp. nov., isolated from a semi-continuous decomposing system of kitchen refuse. , 2004, International journal of systematic and evolutionary microbiology.

[3]  S. Haruta,et al.  Enzyme Production-Based Approach for Determining the Functions of Microorganisms within a Community , 2004, Applied and Environmental Microbiology.

[4]  K. Kida,et al.  The effects of micro-aeration on the phylogenetic diversity of microorganisms in a thermophilic anaerobic municipal solid-waste digester. , 2004, Water research.

[5]  Y. Hadar,et al.  Similarity of bacterial communities in sawdust- and straw-amended cow manure composts. , 2004, FEMS microbiology letters.

[6]  James I. Chang,et al.  Influence of chemical nature of organic wastes on their conversion to hydrogen by heat-shock digested sludge , 2003 .

[7]  K. Schleifer,et al.  Recognition of individual genes in a single bacterial cell by fluorescence in situ hybridization – RING‐FISH , 2003, Molecular microbiology.

[8]  S. Smårs,et al.  Comparison of signature lipid methods to determine microbial community structure in compost. , 2003, Journal of microbiological methods.

[9]  J. VanderGheynst,et al.  Evaluation of PCR primers for denaturing gradient gel electrophoresis analysis of fungal communities in compost , 2003, Journal of applied microbiology.

[10]  S. Tsuneda,et al.  In situ PCR for visualizing distribution of a functional gene "amoA" in a biofilm regardless of activity. , 2003, Journal of biotechnology.

[11]  P. Schloss,et al.  Tracking temporal changes of bacterial community fingerprints during the initial stages of composting. , 2003, FEMS microbiology ecology.

[12]  A. Hiraishi,et al.  Microbial community dynamics during start-up operation of flowerpot-using fed-batch reactors for composting of household biowaste. , 2003, Environmental microbiology.

[13]  Nobuyasu Yamaguchi,et al.  Detection of Bacteria Carrying the stx2 Gene by In Situ Loop-Mediated Isothermal Amplification , 2003, Applied and Environmental Microbiology.

[14]  M. Kimura,et al.  Succession and phylogenetic composition of bacterial communities responsible for the composting process of rice straw estimated by PCR-DGGE analysis , 2003 .

[15]  Toru Matsumoto,et al.  Making Plastics from Garbage , 2003 .

[16]  S. Takii,et al.  Comparison of microbial communities in four different composting processes as evaluated by denaturing gradient gel electrophoresis analysis , 2003, Journal of applied microbiology.

[17]  A. Hiraishi,et al.  High Culturability of Bacteria in Commercially Available Personal Composters for Fed-batch Treatment of Household Biowaste , 2003 .

[18]  Y. Shirai,et al.  Effect of pH Adjustment on Preservation of Kitchen Waste Used for Producing Lactic Acid , 2003 .

[19]  J. Coosemans,et al.  Microbiological aspects of biowaste during composting in a monitored compost bin , 2003, Journal of applied microbiology.

[20]  Mark J. Bailey,et al.  RNA Stable Isotope Probing, a Novel Means of Linking Microbial Community Function to Phylogeny , 2002, Applied and Environmental Microbiology.

[21]  A. Ledin,et al.  Present and Long-Term Composition of MSW Landfill Leachate: A Review , 2002 .

[22]  T. Noike,et al.  Studies on Biological Hydrogen Formation from Organic Fraction of Municipal Solid Wastes , 2002 .

[23]  H. Insam,et al.  Microbial Community Dynamics During Composting of Organic Matter as Determined by 16S Ribosomal DNA Analysis , 2002 .

[24]  S. Haruta,et al.  Microbial community changes during organic solid waste treatment analyzed by double gradient-denaturing gradient gel electrophoresis and fluorescence in situ hybridization , 2002, Applied Microbiology and Biotechnology.

[25]  Rudolf Amann,et al.  Fluorescence In Situ Hybridization and Catalyzed Reporter Deposition for the Identification of Marine Bacteria , 2002, Applied and Environmental Microbiology.

[26]  F. Michel,et al.  Evaluation of extraction and purification methods for obtaining PCR-amplifiable DNA from compost for microbial community analysis. , 2002, Journal of microbiological methods.

[27]  H. Yokoi,et al.  Microbial production of hydrogen from starch-manufacturing wastes , 2002 .

[28]  K. Nakasaki,et al.  A simple numerical model for predicting organic matter decomposition in a fed-batch composting operation. , 2002, Journal of environmental quality.

[29]  J. Tay,et al.  Continuous feed, on-site composting of kitchen garbage , 2002, Waste management & research : the journal of the International Solid Wastes and Public Cleansing Association, ISWA.

[30]  N. Tam,et al.  Microbial Population Dynamics and Enzyme Activities During Composting , 2002 .

[31]  J. Cleveland,et al.  Bacteriocins: safe, natural antimicrobials for food preservation. , 2001, International journal of food microbiology.

[32]  Dorothea K. Thompson,et al.  Development and Evaluation of Functional Gene Arrays for Detection of Selected Genes in the Environment , 2001, Applied and Environmental Microbiology.

[33]  S. Haruta,et al.  Microbial community in anaerobic hydrogen-producing microflora enriched from sludge compost , 2001, Applied Microbiology and Biotechnology.

[34]  P. Rochelle.  Environmental molecular microbiology: protocols and applications. , 2001 .

[35]  K. McMahon,et al.  Anaerobic codigestion of municipal solid waste and biosolids under various mixing conditions--II: Microbial population dynamics. , 2001, Water research.

[36]  W. Ghiorse,et al.  Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA. , 2001, FEMS microbiology ecology.

[37]  M. Fukui,et al.  Microbial succession during a composting process as evaluated by denaturing gradient gel electrophoresis analysis , 2000, Journal of applied microbiology.

[38]  S. Kang,et al.  Identification of Bacteria in Mushroom Compost Using Ribosomal RNA Sequence , 2000 .

[39]  A. Hiraishi,et al.  Seasonal microbial community dynamics in a flowerpot-using personal composting system for disposal of household biowaste. , 2000, The Journal of general and applied microbiology.

[40]  Y. Shirai,et al.  Selective Proliferation of Lactic Acid Bacteria and Accumulation of Lactic Acid during Open Fermentation of Kitchen Refuse with Intermittent pH Adjustment , 2000 .

[41]  Bruno Fabiano,et al.  Process development of continuous hydrogen production by Enterobacter aerogenes in a packed column reactor , 2000 .

[42]  C. Tebbe,et al.  Succession of Microbial Communities during Hot Composting as Detected by PCR–Single-Strand-Conformation Polymorphism-Based Genetic Profiles of Small-Subunit rRNA Genes , 2000, Applied and Environmental Microbiology.

[43]  T. Noike,et al.  Characteristics of Organic Wastes Decomposition in Hydrogen Fermentation , 1999 .

[44]  J. Lay,et al.  Feasibility of biological hydrogen production from organic fraction of municipal solid waste , 1999 .

[45]  A. M. Prescott,et al.  Use of PNA oligonucleotides for the in situ detection of Escherichia coli in water. , 1999, Molecular and cellular probes.

[46]  K. Schleifer,et al.  Combination of Fluorescent In Situ Hybridization and Microautoradiography—a New Tool for Structure-Function Analyses in Microbial Ecology , 1999, Applied and Environmental Microbiology.

[47]  George A. Kowalchuk,et al.  Molecular Analysis of Ammonia-Oxidizing Bacteria of the β Subdivision of the Class Proteobacteria in Compost and Composted Materials , 1999, Applied and Environmental Microbiology.

[48]  M. Aragno,et al.  Thermophilic bacterial communities in hot composts as revealed by most probable number counts and molecular (16S rDNA) methods , 1999 .

[49]  J. Reganold,et al.  Use of Phospholipid Fatty Acids and Carbon Source Utilization Patterns To Track Microbial Community Succession in Developing Compost , 1998, Applied and Environmental Microbiology.

[50]  E. Bååth,et al.  Microbial community dynamics during composting of straw material studied using phospholipid fatty acid analysis , 1998 .

[51]  S. Tanisho,et al.  Effect of CO2 removal on hydrogen production by fermentation , 1998 .

[52]  K. McMahon,et al.  Methanogenic population dynamics during start-up of anaerobic digesters treating municipal solid waste and biosolids. , 1998, Biotechnology and bioengineering.

[53]  L. Zelles,et al.  Emission of Climate-Relevant Trace Gases and Succession of Microbial Communities during Open-Windrow Composting , 1997, Applied and environmental microbiology.

[54]  E. Epstein.  The science of composting , 1996 .

[55]  J. Fischer,et al.  Isolation of Thermus strains from hot composts (60 to 80 degrees C) , 1996, Applied and environmental microbiology.

[56]  N. Yamaguchi,et al.  Detection of specific bacterial cells with 2-hydroxy-3-naphthoic acid-2'-phenylanilide phosphate and fast red TR in situ hybridization , 1996, Applied and environmental microbiology.

[57]  Jean E. Bogner,et al.  Landfills as atmospheric methane sources and sinks , 1995 .

[58]  C. Pettigrew,et al.  Purification and molecular analysis of microbian DNA from compost , 1994 .

[59]  R. Haug.  The Practical Handbook of Compost Engineering , 1993 .

[60]  S. R. Harper,et al.  A novel bioreactor simulating composting of municipal solid waste , 1993 .

[61]  D. M. Ward,et al.  16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community. , 1990, FEMS microbiology reviews.

[62]  G. Vogels,et al.  Isolation and characterization of thermophilic methanogenic bacteria from mushroom compost , 1989 .

[63]  F. C. Miller,et al.  Physical Modeling of the Composting Ecosystem , 1989, Applied and environmental microbiology.

[64]  O. Hutzinger,et al.  Dioxin danger from garbage incineration. , 1986, Analytical chemistry.

[65]  P F Strom,et al.  Identification of thermophilic bacteria in solid-waste composting , 1985, Applied and environmental microbiology.

[66]  P F Strom,et al.  Effect of temperature on bacterial species diversity in thermophilic solid-waste composting , 1985, Applied and environmental microbiology.

[67]  S. Haruta,et al.  Succession of a microbial community during stable operation of a semi-continuous garbage-decomposing system. , 2004, Journal of bioscience and bioengineering.

[68]  H. Insam,et al.  Changes in functional abilities of the microbial community during composting of manure , 2004, Microbial Ecology.

[69]  T. Nishino,et al.  Molecular biological analysis of microflora in a garbage treatment process under thermoacidophilic conditions. , 2004, Journal of bioscience and bioengineering.

[70]  S. Haruta,et al.  Isolation and characterization of predominant microorganisms during decomposition of waste materials in a field-scale composter. , 2003, Journal of bioscience and bioengineering.

[71]  T. Nishino,et al.  Acidulocomposting, an Accelerated Composting Process of Garbage under Thermoacidophilic Conditions for Prolonged Periods , 2003 .

[72]  Dirk De Clercq,et al.  A survey of bacteria and fungi occurring during composting and self-heating processes , 2003 .

[73]  S. M. Tiquia,et al.  Bacterial Diversity in Livestock Manure Composts as Characterized by Terminal Restriction Fragment Length Polymorphisms (T-RFLP) of PCR-amplified 16s rRNA Gene Sequences , 2002 .

[74]  T. Marsh,et al.  Bacterial Community Structure During Yard Trimmings Composting , 2002 .

[75]  Yi Zhang,et al.  Enumeration of thermophilic Bacillus species in composts and identification with a Random Amplification Polymorphic DNA (RAPD) protocol. , 2002, Systematic and applied microbiology.

[76]  S. Kang,et al.  Survey of Fungal Diversity in Mushroom Compost Using Sequences of PCR-Amplified Genes Encoding 18S Ribosomal RNA , 2002 .

[77]  H. Insam,et al.  Characterisation of Microbial Communities During Composting of Organic Wastes , 2002 .

[78]  Heribert Insam,et al.  Microbiology of Composting , 2002, Springer Berlin Heidelberg.

[79]  Susanne,et al.  Microbiology of Composting || Bacterial Diversity in Livestock Manure Composts as Characterized by Terminal Restriction Fragment Length Polymorphisms (T-RFLP) of PCR-amplified 16s rRNA Gene Sequences , 2002 .

[80]  T. Mino,et al.  Microbial community analysis of thermophilic contact oxidation process by using ribosomal RNA approaches and the quinone profile method. , 2002, Water research.

[81]  A. Hiraishi.  Vermicomposting of household biowaste using Eisenia fetida: Evaluation of waste reduction efficiency and coexistent microbial community structure , 2002 .

[82]  S. Haruta,et al.  Characterization of a microorganism isolated from the effluent of hydrogen fermentation by microflora. , 2001, Journal of bioscience and bioengineering.

[83]  H Yokoi,et al.  Microbial hydrogen production from sweet potato starch residue. , 2001, Journal of bioscience and bioengineering.

[84]  S. Haruta,et al.  Denaturing gradient gel electrophoresis analyses of microbial community from field-scale composter. , 2001, Journal of bioscience and bioengineering.

[85]  S. Haruta,et al.  Analyses of microbial community within a composter operated using household garbage with special reference to the addition of soybean oil. , 2001, Journal of bioscience and bioengineering.

[86]  A. Hiraishi.  Effects of weather and other environmental factors on the performance of a composting system using flowerpots for disposal of household biowaste. , 2000 .

[87]  A. Hiraishi.  Isoprenoid quinones as biomarkers of microbial populations in the environment. , 1999, Journal of bioscience and bioengineering.

[88]  M. Ishii,et al.  Physiological and chemotaxonomical studies on microflora within a composter operated at high temperature. , 1999, Journal of bioscience and bioengineering.

[89]  M. Iwao.  Movement of the sludge regeneration processing center. On the Mebius system. , 1998 .

[90]  M. Sakagami.  Movement of the sludge regeneration processing center. On Renaissa system. , 1998 .

[91]  R. Herrmann,et al.  Microbial Community Changes During the Composting of Municipal Solid Waste , 1997, Microbial Ecology.

[92]  Makoto Shoda,et al.  The present situation and a new trend on composting in Japan. , 1996 .

[93]  Y. Fujio,et al.  Isolation and Identification of Thermophilic Bacteria from Sewage Sludge Compost , 1991 .

[94]  Tetsuo Akiyama,et al.  Effects of seeding on thermophilic composting of household organic waste , 1988 .

[95]  M. S. Finstein,et al.  Microbiology of municipal solid waste composting. , 1975, Advances in applied microbiology.