Equilibrium Information from Nonequilibrium Measurements in an Experimental Test of Jarzynski's Equality

Recent advances in statistical mechanical theory can be used to solve a fundamental problem in experimental thermodynamics. In 1997, Jarzynski proved an equality relating the irreversible work to the equilibrium free energy difference, ΔG. This remarkable theoretical result states that it is possible to obtain equilibrium thermodynamic parameters from processes carried out arbitrarily far from equilibrium. We test Jarzynski's equality by mechanically stretching a single molecule of RNA reversibly and irreversibly between two conformations. Application of this equality to the irreversible work trajectories recovers the ΔG profile of the stretching process to withink B T/2 (half the thermal energy) of its best independent estimate, the mean work of reversible stretching. The implementation and test of Jarzynski's equality provides the first example of its use as a bridge between the statistical mechanics of equilibrium and nonequilibrium systems. This work also extends the thermodynamic analysis of single molecule manipulation data beyond the context of equilibrium experiments.

[1]  H. Callen,et al.  Irreversibility and Generalized Noise , 1951 .

[2]  K. Kawasaki,et al.  Nonlinear Effects in the Shear Viscosity of Critical Mixtures , 1967 .

[3]  Jan Hermans,et al.  Simple analysis of noise and hysteresis in (slow-growth) free energy simulations , 1991 .

[4]  Robert H. Wood,et al.  Systematic errors in free energy perturbation calculations due to a finite sample of configuration space: sample-size hysteresis , 1991 .

[5]  Evans,et al.  Probability of second law violations in shearing steady states. , 1993, Physical review letters.

[6]  Evans,et al.  Equilibrium microstates which generate second law violating steady states. , 1994, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[7]  Cohen,et al.  Dynamical Ensembles in Nonequilibrium Statistical Mechanics. , 1994, Physical review letters.

[8]  C. Kundrot,et al.  Crystal Structure of a Group I Ribozyme Domain: Principles of RNA Packing , 1996, Science.

[9]  Eric J. Brown,et al.  Decreased Resistance to Bacterial Infection and Granulocyte Defects in IAP-Deficient Mice , 1996, Science.

[10]  E. Kandel,et al.  Control of Memory Formation Through Regulated Expression of a CaMKII Transgene , 1996, Science.

[11]  C. Bustamante,et al.  Overstretching B-DNA: The Elastic Response of Individual Double-Stranded and Single-Stranded DNA Molecules , 1996, Science.

[12]  C. Jarzynski Equilibrium free-energy differences from nonequilibrium measurements: A master-equation approach , 1997, cond-mat/9707325.

[13]  C. Jarzynski Nonequilibrium Equality for Free Energy Differences , 1996, cond-mat/9610209.

[14]  G. Crooks Nonequilibrium Measurements of Free Energy Differences for Microscopically Reversible Markovian Systems , 1998 .

[15]  Jorge Kurchan,et al.  Fluctuation theorem for stochastic dynamics , 1998 .

[16]  J. Lebowitz,et al.  A Gallavotti–Cohen-Type Symmetry in the Large Deviation Functional for Stochastic Dynamics , 1998, cond-mat/9811220.

[17]  The Fluctuation Theorem as a Gibbs Property , 1998, math-ph/9812015.

[18]  G. Crooks Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences. , 1999, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[19]  G. Crooks Path-ensemble averages in systems driven far from equilibrium , 1999, cond-mat/9908420.

[20]  G. Hummer,et al.  Free energy reconstruction from nonequilibrium single-molecule pulling experiments , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[21]  C. Jarzynski,et al.  A “fast growth” method of computing free energy differences , 2001 .

[22]  C Jarzynski,et al.  How does a system respond when driven away from thermal equilibrium? , 2001, Proceedings of the National Academy of Sciences of the United States of America.