RegRNA: an integrated web server for identifying regulatory RNA motifs and elements
暂无分享,去创建一个
Hsien-Da Huang | Chia-Hung Chien | Hsi-Yuan Huang | Kuan-Hua Jen | Hsi-Yuan Huang | Hsien-Da Huang | Chia-Hung Chien | Kuangyu Jen
[1] Graziano Pesole,et al. PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences , 2003, Nucleic Acids Res..
[2] H. Hoos,et al. HotKnots: heuristic prediction of RNA secondary structures including pseudoknots. , 2005, RNA.
[3] Sean R. Eddy,et al. Rfam: annotating non-coding RNAs in complete genomes , 2004, Nucleic Acids Res..
[4] Thangavel Alphonse Thanaraj,et al. ASD: a bioinformatics resource on alternative splicing , 2005, Nucleic Acids Res..
[5] S. Salzberg,et al. GeneSplicer: a new computational method for splice site prediction. , 2001, Nucleic acids research.
[6] Alexander E. Kel,et al. TRANSFAC® and its module TRANSCompel®: transcriptional gene regulation in eukaryotes , 2005, Nucleic Acids Res..
[7] G. Pesole,et al. Internet resources for the functional analysis of 5' and 3' untranslated regions of eukaryotic mRNAs. , 1999, Trends in genetics : TIG.
[8] D. Ecker,et al. RNAMotif, an RNA secondary structure definition and search algorithm. , 2001, Nucleic acids research.
[9] M. Hentze,et al. Molecular control of vertebrate iron metabolism: mRNA-based regulatory circuits operated by iron, nitric oxide, and oxidative stress. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[10] Jinhua Wang,et al. ESEfinder: a web resource to identify exonic splicing enhancers , 2003, Nucleic Acids Res..
[11] Enrique Merino,et al. RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements , 2005, Nucleic Acids Res..
[12] G. Stormo,et al. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences. , 2004, Bioinformatics.
[13] I. Longden,et al. EMBOSS: the European Molecular Biology Open Software Suite. , 2000, Trends in genetics : TIG.
[14] Michael Zuker,et al. Mfold web server for nucleic acid folding and hybridization prediction , 2003, Nucleic Acids Res..
[15] Stijn van Dongen,et al. miRBase: microRNA sequences, targets and gene nomenclature , 2005, Nucleic Acids Res..
[16] Xing Xu,et al. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences , 2004, Bioinform..
[17] Tamar Schlick,et al. Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs , 2005, Nucleic acids research.
[18] Thomas Dandekar,et al. Riboswitch finder tool for identification of riboswitch RNAs , 2004, Nucleic Acids Res..
[19] R. Breaker,et al. Gene regulation by riboswitches , 2004, Nature Reviews Molecular Cell Biology.
[20] Hsien-Da Huang,et al. miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes , 2005, Nucleic Acids Res..
[21] Graziano Pesole,et al. UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs , 2004, Nucleic Acids Res..
[22] Anton J. Enright,et al. MicroRNA targets in Drosophila , 2003, Genome Biology.
[23] Chris M. Brown,et al. Transterm—extended search facilities and improved integration with other databases , 2005, Nucleic Acids Res..
[24] A. Krainer,et al. Listening to silence and understanding nonsense: exonic mutations that affect splicing , 2002, Nature Reviews Genetics.