Introduction to the Proteobacteria

[1]  W. Drozanski.  Sarcobium lyticum gen. nov., sp. nov., an Obligate Intracellular Bacterial Parasite of Small Free-Living Amoebae† , 1991 .

[2]  M. Wagner,et al.  Obligate bacterial endosymbionts of Acanthamoeba spp. related to the beta-Proteobacteria: proposal of 'Candidatus Procabacter acanthamoebae' gen. nov., sp. nov. , 2002, International journal of systematic and evolutionary microbiology.

[3]  Philip Hugenholtz,et al.  Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity , 1998, Journal of bacteriology.

[4]  W. H. Burkholder.  Sour skin, a bacterial rot of Onion bulbs. , 1950 .

[5]  D. Distel,et al.  Characterization of the gill symbiont of Thyasira flexuosa (Thyasiridae: Bivalvia) by use of polymerase chain reaction and 16S rRNA sequence analysis , 1992, Journal of bacteriology.

[6]  M. Collins,et al.  Characterization of tropical tree rhizobia and description of Mesorhizobium plurifarium sp. nov. , 1998, International journal of systematic bacteriology.

[7]  M. Collins,et al.  Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication. , 1981, Microbiological reviews.

[8]  D. Kelly,et al.  Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov. , 2000, International journal of systematic and evolutionary microbiology.

[9]  H. Reichenbach,et al.  Biologically active secondary metabolites from myxobacteria. , 1993, Biotechnology advances.

[10]  B. Jørgensen,et al.  Psychrophilic sulfate-reducing bacteria isolated from permanently cold arctic marine sediments: description of Desulfofrigus oceanense gen. nov., sp. nov., Desulfofrigus fragile sp. nov., Desulfofaba gelida gen. nov., sp. nov., Desulfotalea psychrophila gen. nov., sp. nov. and Desulfotalea arctica s , 1999, International journal of systematic bacteriology.

[11]  M. Achtman,et al.  Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[12]  C. Kurland,et al.  The Dual Origin of the Yeast Mitochondrial Proteome , 2000, Yeast.

[13]  K. Schleifer,et al.  Zoogloea ramigera: A phylogenetically diverse species , 1993 .

[14]  P. Baumann,et al.  Pea aphid symbiont relationships established by analysis of 16S rRNAs , 1989, Journal of bacteriology.

[15]  P. Vandamme,et al.  Occurrence of multiple genomovars of Burkholderia cepacia in cystic fibrosis patients and proposal of Burkholderia multivorans sp. nov. , 1997, International journal of systematic bacteriology.

[16]  J. Swings.  The genera Acetobacter and Gluconobacter , 1992 .

[17]  E. Stackebrandt,et al.  Systematic relationships and cospeciation of bacterial endosymbionts and their carpenter ant host species: proposal of the new taxon Candidatus Blochmannia gen. nov. , 2000, International journal of systematic and evolutionary microbiology.

[18]  P. Cronjé,et al.  Genomic characterization of a liberibacter present in an ornamental rutaceous tree, Calodendrum capense, in the Western Cape Province of South Africa. Proposal of 'Candidatus Liberibacter africanus subsp. capensis'. , 2000, International journal of systematic and evolutionary microbiology.

[19]  J. T. Staley,et al.  Phylogeny of the genus Simonsiella and other members of the Neisseriaceae. , 2002, International journal of systematic and evolutionary microbiology.

[20]  H. Ochman,et al.  Evolution in bacteria: Evidence for a universal substitution rate in cellular genomes , 1987, Journal of Molecular Evolution.

[21]  J. T. Staley,et al.  Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. , 1985, Annual review of microbiology.

[22]  J. Bové,et al.  The phloem-limited bacterium of greening disease of citrus is a member of the alpha subdivision of the Proteobacteria. , 1994, International journal of systematic bacteriology.

[23]  Hans-Peter Klenk,et al.  Overview: A Phylogenetic Backbone and Taxonomic Framework for Procaryotic Systematics , 2015 .

[24]  E. Stackebrandt,et al.  Halomonas halocynthiae sp. nov., isolated from the marine ascidian Halocynthia aurantium. , 2002, International journal of systematic and evolutionary microbiology.

[25]  A. Willems,et al.  Transfer of Rhodocyclus gelatinosus to Rubrivivax gelatinosus gen. nov. , comb. nov. , and Phylogenetic Relationships with Leptothrix, Sphaerotilus natans, Pseudomonas saccharophila, and Alcaligenes latus , 1991 .

[26]  H. Reichenbach,et al.  The correlation between morphological and phylogenetic classification of myxobacteria. , 1999, International journal of systematic bacteriology.

[27]  J. Ravel,et al.  A proposal for the reclassification of Bdellovibrio stolpii and Bdellovibrio starrii into a new genus, Bacteriovorax gen. nov. as Bacteriovorax stolpii comb. nov. and Bacteriovorax starrii comb. nov., respectively. , 2000, International journal of systematic and evolutionary microbiology.

[28]  A. Hiraishi,et al.  Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. , 2001, International journal of systematic and evolutionary microbiology.

[29]  J. Imhoff.  True marine and halophilic anoxygenic phototrophic bacteria , 2001, Archives of Microbiology.

[30]  B. Campbell,et al.  Growth and Phylogenetic Properties of Novel Bacteria Belonging to the Epsilon Subdivision of the Proteobacteria Enriched fromAlvinella pompejana and Deep-Sea Hydrothermal Vents , 2001, Applied and Environmental Microbiology.

[31]  Werner Liesack,et al.  Methylocapsa acidiphila gen. nov., sp. nov., a novel methane-oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog. , 2002, International journal of systematic and evolutionary microbiology.

[32]  I. Khan,et al.  Stenotrophomonas maltophilia Endocarditis: A Systematic Review , 2002, Angiology.

[33]  V. Yurkov,et al.  Aerobic Anoxygenic Phototrophic Bacteria , 1998, Microbiology and Molecular Biology Reviews.

[34]  P. Vandamme,et al.  Phylogenetic characterization of 'Candidatus Helicobacter bovis', a new gastric helicobacter in cattle. , 1999, International journal of systematic bacteriology.

[35]  E. Stackebrandt,et al.  Desulfurella acetivorans, a Thermophilic, Acetate-Oxidizing and Sulfur-Reducing Organism, Represents a Distinct Lineage within the Proteobacteria , 1993 .

[36]  F. Widdel,et al.  Degradative capacities and 16S rRNA-targeted whole-cell hybridization of sulfate-reducing bacteria in an anaerobic enrichment culture utilizing alkylbenzenes from crude oil , 1996, Applied and environmental microbiology.

[37]  R Amann,et al.  Phylogenetic analysis and in situ identification of bacteria in activated sludge , 1997, Applied and environmental microbiology.

[38]  H. Urakawa,et al.  Characterization of depth-related population variation in microbial communities of a coastal marine sediment using 16S rDNA-based approaches and quinone profiling. , 2000, Environmental microbiology.

[39]  B. Lang,et al.  Mitochondrial evolution. , 1999, Science.

[40]  B. Lang,et al.  A Comparative Genomics Approach to the Evolution of Eukaryotes and their Mitochondria 1 , 1999, The Journal of eukaryotic microbiology.

[41]  J. Werren,et al.  Molecular identification of microorganisms associated with parthenogenesis , 1993, Nature.

[42]  Lynn Margulis,et al.  Symbiosis in Cell Evolution: Microbial Communities in the Archean and Proterozoic Eons , 1992 .

[43]  S. Giovannoni,et al.  Genetic diversity in Sargasso Sea bacterioplankton , 1990, Nature.

[44]  K. Schleifer,et al.  The mesophilic hydrogen-oxidizing (knallgas) bacteria. , 1992 .

[45]  L. Margulis.  Archaeal-eubacterial mergers in the origin of Eukarya: phylogenetic classification of life. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[46]  Stuart H. Cohen,et al.  Risk Factors Associated With Isolation of Stenotrophomonas (Xanthomonas) maltophilia in Clinical Specimens , 1997, Infection Control & Hospital Epidemiology.

[47]  T. Cavalier-smith,et al.  The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification. , 2002, International journal of systematic and evolutionary microbiology.

[48]  R. Birch.  PLANT TRANSFORMATION: Problems and Strategies for Practical Application. , 1997, Annual review of plant physiology and plant molecular biology.

[49]  Tom Coenye,et al.  Taxonomy and Identification of the Burkholderia cepacia Complex , 2001, Journal of Clinical Microbiology.

[50]  C R Woese,et al.  The phylogeny of prokaryotes. , 1980, Microbiological sciences.

[51]  B. Dreyfus,et al.  Nodulation of legumes by members of the β-subclass of Proteobacteria , 2001, Nature.

[52]  C. Woese,et al.  NOTES: Arsenophonus nasoniae gen. nov., sp. nov., the Causative Agent of the Son-Killer Trait in the Parasitic Wasp Nasonia vitripennis , 1991 .

[53]  K. Komagata,et al.  Reclassification of Pseudomonas acidovorans den Dooren de Jong 1926 and Pseudomonas testosteroni Marcus and Talalay 1956 as Comamonas acidovorans comb. nov. and Comamonas testosteroni comb. nov., with an Emended Description of the Genus Comamonas , 1987 .

[54]  C. Woese,et al.  Phylogenetic structure of the prokaryotic domain: The primary kingdoms , 1977, Proceedings of the National Academy of Sciences of the United States of America.

[55]  W. Whitman,et al.  Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. , 2002, International journal of systematic and evolutionary microbiology.

[56]  R. Fleischmann,et al.  Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. , 1995, Science.

[57]  Yves Van de Peer,et al.  Construction of evolutionary distance trees with TREECON for Windows: accounting for variation in nucleotide substitution rate among sites , 1997, Comput. Appl. Biosci..

[58]  O. Gros,et al.  Putative environmental transmission of sulfur-oxidizing bacterial symbionts in tropical lucinid bivalves inhabiting various environments , 1998 .

[59]  Ju-Young Park,et al.  Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. , 2000, International journal of systematic and evolutionary microbiology.

[60]  A. Bird,et al.  Colonic Infection by Bilophila wadsworthia in Pigs , 2001, Journal of Clinical Microbiology.

[61]  J. Young,et al.  Phylogenies of atpD and recA support the small subunit rRNA-based classification of rhizobia. , 2001, International journal of systematic and evolutionary microbiology.

[62]  K. Schleifer,et al.  Taxonomic notes: a proposal for recording the properties of putative taxa of procaryotes. , 1994, International journal of systematic bacteriology.

[63]  D. O’Callaghan,et al.  Genome structure and phylogeny in the genus Brucella , 1997, Journal of bacteriology.

[64]  Linda L. Blackall,et al.  Multiple Lateral Transfers of Dissimilatory Sulfite Reductase Genes between Major Lineages of Sulfate-Reducing Prokaryotes , 2001, Journal of bacteriology.

[65]  J. Mergaert,et al.  Phylogenetic position of phytopathogens within the Enterobacteriaceae. , 1998, Systematic and applied microbiology.

[66]  J. Bowman,et al.  Novel Psychrobacter species from Antarctic ornithogenic soils. , 1996, International journal of systematic bacteriology.

[67]  J. Olson.  The evolution of photosynthesis. , 1970, Science.

[68]  E. Stackebrandt,et al.  Phylogenetic analysis of Formivibrio citricus, Propionivibrio dicarboxylicus, Anaerobiospirillum thomasii, Succinimonas amylolytica and Succinivibrio dextrinosolvens and proposal of Succinivibrionaceae fam. nov. , 1999, International journal of systematic bacteriology.

[69]  A. Willems,et al.  NOTES: Comamonadaceae, a New Family Encompassing the Acidovorans rRNA Complex, Including Variovorax paradoxus gen. nov., comb. nov., for Alcaligenes paradoxus (Davis 1969) , 1991 .

[70]  W. Liesack,et al.  Phylogenetic analysis of five strains of Gram-negative, obligately anaerobic, sulfur-reducing bacteria and description of Desulfuromusa gen. nov., including Desulfuromusa kysingii sp. nov., Desulfuromusa bakii sp. nov., and Desulfuromusa succinoxidans sp. nov. , 1994 .

[71]  P. Vandamme,et al.  Diagnostically and Experimentally Useful Panel of Strains from the Burkholderia cepacia Complex , 2000, Journal of Clinical Microbiology.

[72]  M. Achtman.  Microevolution during epidemic spread of Neisseria meningitidis (minireview) , 1998, Electrophoresis.

[73]  P. de Vos,et al.  Polyphasic Taxonomy , a Consensus Approach to Bacterial Systematics , 1996 .

[74]  S. Hazell,et al.  Helicobacter Pylori: Physiology and Genetics , 2001 .

[75]  K. Schleifer,et al.  The close phylogenetic relationship of Nitrobacter and Rhodopseudomonas palustris , 1982, Archives of Microbiology.

[76]  J Keller,et al.  Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors , 1995, Applied and environmental microbiology.

[77]  John L. Johnson,et al.  The evolutionary pattern of aromatic amino acid biosynthesis and the emerging phylogeny of pseudomonad bacteria , 2005, Journal of Molecular Evolution.

[78]  W. Liesack,et al.  Unculturable microbes detected by molecular sequences and probes , 2004, Biodiversity & Conservation.

[79]  P. Herring,et al.  Polymerase Chain reaction and 16S rRNA gene sequences from the luminous bacterial symbionts of two deep-sea anglerfishes , 1992, Journal of the Marine Biological Association of the United Kingdom.

[80]  B. Patel,et al.  Quadricoccus australiensis gen. nov., sp. nov., a beta-proteobacterium from activated sludge biomass. , 2002, International journal of systematic and evolutionary microbiology.

[81]  J. Imhoff,et al.  Rearrangement of the Species and Genera of the Phototrophic “Purple Nonsulfur Bacteria” , 1984 .

[82]  S. Barns,et al.  Characterization of Lawsonia intracellularis gen. nov., sp. nov., the obligately intracellular bacterium of porcine proliferative enteropathy. , 1995, International journal of systematic bacteriology.

[83]  P. Vandamme,et al.  'Candidatus Helicobacter suis', a gastric helicobacter from pigs, and its phylogenetic relatedness to other gastrospirilla. , 1999, International journal of systematic bacteriology.

[84]  N. Moran,et al.  A molecular clock in endosymbiotic bacteria is calibrated using the insect hosts , 1993, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[85]  G. Auling,et al.  Polyamine Pattern as a Chemotaxonomic Marker within the Proteobacteria , 1988 .

[86]  M. Gillis,et al.  Taxonomy of Moraxellaceae fam. nov., a New Bacterial Family To Accommodate the Genera Moraxella, Acinetobacter, and Psychrobacter and Related Organisms , 1991 .

[87]  L. Pauling,et al.  Molecules as documents of evolutionary history. , 1965, Journal of theoretical biology.

[88]  E. Stackebrandt,et al.  Phylogenetic, Evolutionary, and Taxonomic Aspects of Phototrophic Eubacteria , 1988 .

[89]  M. Collins,et al.  Transfer of Campylobacter pylori and Campylobacter mustelae to Helicobacter gen. nov. as Helicobacter pylori comb. nov. and Helicobacter mustelae comb. nov., Respectively , 1989 .

[90]  J. Ley,et al.  Inter- and Intrageneric Similarities of Ribosomal Ribonucleic Acid Cistrons of the Neisseriaceae , 1986 .

[91]  R. E. Dickerson.  Cytochrome c and the evolution of energy metabolism. , 1980, Scientific American.

[92]  P. Lawson,et al.  Antarctobacter heliothermus gen. nov., sp. nov., a budding bacterium from hypersaline and heliothermal Ekho Lake. , 1998, International journal of systematic bacteriology.

[93]  T. Macke,et al.  A phylogenetic definition of the major eubacterial taxa. , 1985, Systematic and applied microbiology.

[94]  R. Gupta,et al.  The phylogeny of proteobacteria: relationships to other eubacterial phyla and eukaryotes. , 2000, FEMS microbiology reviews.

[95]  A. Gibbs,et al.  Molecular Basis of Virus Evolution , 2005 .

[96]  P. Vandamme,et al.  Proposal for a New Family, Campylobacteraceae , 1991 .

[97]  P. Vandamme,et al.  Balneatrix alpica gen. nov., sp. nov., a bacterium associated with pneumonia and meningitis in a spa therapy center. , 1993, Research in microbiology.

[98]  F. Brockman,et al.  A molecular comparison of culturable aerobic heterotrophic bacteria and 16S rDNA clones derived from a deep subsurface sediment , 1997 .

[99]  F. Rainey,et al.  Hippea maritima gen. nov., sp. nov., a new genus of thermophilic, sulfur-reducing bacterium from submarine hot vents. , 1999, International journal of systematic bacteriology.

[100]  B. Crespi.  The evolution of social behavior in microorganisms. , 2001, Trends in ecology & evolution.

[101]  in chief George M. Garrity.  Bergey’s Manual® of Systematic Bacteriology , 1989, Springer New York.

[102]  D. Raoult,et al.  'Candidatus Odyssella thessalonicensis' gen. nov., sp. nov., an obligate intracellular parasite of Acanthamoeba species. , 2000, International journal of systematic and evolutionary microbiology.

[103]  J. Ley.  The Proteobacteria. Ribosomal RNA cistron similarities and bacterial taxonomy , 1992 .

[104]  A. Hiraishi,et al.  ISOPRENOID QUINONE COMPOSITION IN THE CLASSIFICATION OF RHODOSPIRILLACEAE , 1984 .

[105]  Estelle Jumas-Bilak,et al.  Proteobacteria Alpha Subgroup of the Unconventional Genomic Organization in The , 1998 .

[106]  Y. Igarashi,et al.  Hydrogenophilus thermoluteolus gen. nov., sp. nov., a thermophilic, facultatively chemolithoautotrophic, hydrogen-oxidizing bacterium. , 1999, International journal of systematic bacteriology.

[107]  E. Ruby.  The Genus Bdellovibrio , 1992 .

[108]  B W Sobral,et al.  Electrophoretic separation of the three Rhizobium meliloti replicons , 1991, Journal of bacteriology.

[109]  G. Muyzer,et al.  Molecular identification of bacteria from a coculture by denaturing gradient gel electrophoresis of 16S ribosomal DNA fragments as a tool for isolation in pure cultures , 1996, Applied and environmental microbiology.

[110]  M. Collins,et al.  Respiratory Quinones of Sulphate-Reducing and Sulphur-Reducing Bacteria: A Systematic Investigation , 1986 .

[111]  E. Stackebrandt,et al.  Anoxygenic phototrophy across the phylogenetic spectrum: current understanding and future perspectives , 1996, Archives of Microbiology.

[112]  Eric Giraud,et al.  Methylotrophic MethylobacteriumBacteria Nodulate and Fix Nitrogen in Symbiosis with Legumes , 2001, Journal of bacteriology.

[113]  K. Schleifer,et al.  Polyphasic Characterization of the Genus Leptothrix: New Descriptions of Leptothrix mobilis sp. nov. and Leptothrix discophora sp. nov. nom. rev. and Emended Description of Leptothrix cholodnii emend. , 1996 .

[114]  A. Neumann,et al.  Isolation and characterization of Dehalospirillum multivorans gen. nov., sp. nov., a tetrachloroethene-utilizing, strictly anaerobic bacterium , 2004, Archives of Microbiology.

[115]  P. Dennis,et al.  RNA Polymerase of Aquifex pyrophilus: Implications for the Evolution of the Bacterial rpoBC Operon and Extremely Thermophilic Bacteria , 1999, Journal of Molecular Evolution.

[116]  H. Gest,et al.  Heliobacterium chlorum, an anoxygenic brownish-green photosynthetic bacterium containing a “new” form of bacteriochlorophyll , 1983, Archives of Microbiology.

[117]  E. Delong,et al.  Characterization of an Autotrophic Sulfide-Oxidizing Marine Arcobacter sp. That Produces Filamentous Sulfur , 2002, Applied and Environmental Microbiology.

[118]  E. Stackebrandt,et al.  Desulfovirga adipica gen. nov., sp. nov., an adipate-degrading, gram-negative, sulfate-reducing bacterium. , 2000, International journal of systematic and evolutionary microbiology.

[119]  J. Parke,et al.  Diversity of the Burkholderia cepacia complex and implications for risk assessment of biological control strains. , 2001, Annual review of phytopathology.

[120]  C R Woese,et al.  The phylogeny of purple bacteria: the alpha subdivision. , 1984, Systematic and applied microbiology.

[121]  E. Corre,et al.  ɛ-Proteobacterial diversity from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge , 2001 .

[122]  R. Gustafson,et al.  Vertical transmission of chemoautotrophic symbionts in the bivalve Solemya velum (Bivalvia: Protobranchia). , 1996, The Biological bulletin.

[123]  C. Kurland,et al.  Origins of mitochondria and hydrogenosomes. , 1999, Current opinion in microbiology.

[124]  R. Birtles,et al.  Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens , 1996 .

[125]  Ehrenberg.  Vorläufige Mittheilungen über das wirkliche Vorkommen fossiler Infusorien und ihre grosse Verbreitung , 1836 .

[126]  T. Sicheritz-Pontén,et al.  The genome sequence of Rickettsia prowazekii and the origin of mitochondria , 1998, Nature.

[127]  Eric Giraud,et al.  Bacteriophytochrome controls photosystem synthesis in anoxygenic bacteria , 2002, Nature.

[128]  G. Voordouw,et al.  Characterization of 16S rRNA genes from oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria , 1996, Applied and environmental microbiology.

[129]  S. Ray,et al.  Reorganization of genera in the families Rickettsiaceae and Anaplasmataceae in the order Rickettsiales: unification of some species of Ehrlichia with Anaplasma, Cowdria with Ehrlichia and Ehrlichia with Neorickettsia, descriptions of six new species combinations and designation of Ehrlichia equi and , 2001, International journal of systematic and evolutionary microbiology.

[130]  J. Lipuma,et al.  Disproportionate distribution of Burkholderia cepacia complex species and transmissibility markers in cystic fibrosis. , 2001, American journal of respiratory and critical care medicine.

[131]  R. Gupta,et al.  Cloning of the hsp70 (dnaK) genes from Rhizobium meliloti and Pseudomonas cepacia: phylogenetic analyses of mitochondrial origin based on a highly conserved protein sequence , 1994, Journal of bacteriology.

[132]  K. Schleifer,et al.  Phylogenetic Oligodeoxynucleotide Probes for the Major Subclasses of Proteobacteria: Problems and Solutions , 1992 .

[133]  M Mergeay,et al.  Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient. , 2001, International journal of systematic and evolutionary microbiology.

[134]  E. Stackebrandt,et al.  Taxonomic note: implementation of the provisional status Candidatus for incompletely described procaryotes. , 1995, International journal of systematic bacteriology.

[135]  V. Hypša,et al.  In vitro culture and phylogenetic analysis of "Candidatus Arsenophonus triatominarum," an intracellular bacterium from the triatomine bug, Triatoma infestans. , 1997, International journal of systematic bacteriology.

[136]  C. Kurland,et al.  Origin and Evolution of the Mitochondrial Proteome , 2000, Microbiology and Molecular Biology Reviews.

[137]  J. Ley,et al.  Inter- and intrafamilial similarities of rRNA cistrons of the Pasteurellaceae. , 1990, International journal of systematic bacteriology.

[138]  A. Willems,et al.  Brackiella oedipodis gen. nov., sp. nov., gram-negative, oxidase-positive rods that cause endocarditis of cotton-topped tamarin (Saguinus oedipus). , 2002, International journal of systematic and evolutionary microbiology.

[139]  J. Bové,et al.  Phylogenetic characterization of the bacterium-like organism associated with marginal chlorosis of strawberry and proposition of a Candidatus taxon for the organism, 'Candidatus phlomobacter fragariae'. , 1998, International journal of systematic bacteriology.

[140]  Brian J. Tindall,et al.  16S rDNA diversity of cultured and uncultured prokaryotes of a mat sample from Lake Fryxell, McMurdo Dry Valleys, Antarctica , 2001, Extremophiles.

[141]  K. Schleifer,et al.  Phylogenetic identification and in situ detection of individual microbial cells without cultivation. , 1995, Microbiological reviews.

[142]  K. Schleifer,et al.  Probing activated sludge with oligonucleotides specific for proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure , 1993, Applied and environmental microbiology.

[143]  K. Andree,et al.  'Candidatus Xenohaliotis californiensis', a newly described pathogen of abalone, Haliotis spp., along the west coast of North America. , 2000, International journal of systematic and evolutionary microbiology.

[144]  A. Southward,et al.  Chemoautotrophy in Bivalve Molluscs of the Genus Thyasira , 1986, Journal of the Marine Biological Association of the United Kingdom.

[145]  A. Willems,et al.  Photosynthetic Bradyrhizobia from Aeschynomene spp. Are Specific to Stem-Nodulated Species and Form a Separate 16S Ribosomal DNA Restriction Fragment Length Polymorphism Group , 1999, Applied and Environmental Microbiology.

[146]  G. Auling.  Polyamines, biomarker for taxonomy and ecology of phytopathogenic and other bacteria belonging to the proteobacteria , 1992 .

[147]  Y. Nodasaka,et al.  Roseateles depolymerans gen. nov., sp. nov., a new bacteriochlorophyll a-containing obligate aerobe belonging to the beta-subclass of the Proteobacteria. , 1999, International journal of systematic bacteriology.

[148]  P. Lawson,et al.  Staleya guttiformis gen. nov., sp. nov. and Sulfitobacter brevis sp. nov., alpha-3-Proteobacteria from hypersaline, heliothermal and meromictic antarctic Ekho Lake. , 2000, International journal of systematic and evolutionary microbiology.

[149]  C. Turck,et al.  Presence of a Member of the Mitochondrial Carrier Family in Hydrogenosomes: Conservation of Membrane-Targeting Pathways between Hydrogenosomes and Mitochondria , 2000, Molecular and Cellular Biology.

[150]  R. M. Smibert.  The genus Campylobacter. , 1978, Annual review of microbiology.

[151]  Rudolf Amann,et al.  rRNA based identification and detection systems for rhizobia and other bacteria , 1998, Plant and Soil.

[152]  T. McMeekin,et al.  Diversity and community structure within anoxic sediment from marine salinity meromictic lakes and a coastal meromictic marine basin, Vestfold Hilds, Eastern Antarctica. , 2000, Environmental microbiology.

[153]  M Mergeay,et al.  Classification of metal-resistant bacteria from industrial biotopes as Ralstonia campinensis sp. nov., Ralstonia metallidurans sp. nov. and Ralstonia basilensis Steinle et al. 1998 emend. , 2001, International journal of systematic and evolutionary microbiology.

[154]  K. Schleifer,et al.  Combination of Fluorescent In Situ Hybridization and Microautoradiography—a New Tool for Structure-Function Analyses in Microbial Ecology , 1999, Applied and Environmental Microbiology.

[155]  F. Dewhirst,et al.  'Flexispira rappini' strains represent at least 10 Helicobacter taxa. , 2000, International journal of systematic and evolutionary microbiology.

[156]  E. Stackebrandt,et al.  The phylogenetic position of the family Methylococcaceae. , 1995, International journal of systematic bacteriology.

[157]  R. Colwell.  Polyphasic Taxonomy of the Genus Vibrio: Numerical Taxonomy of Vibrio cholerae, Vibrio parahaemolyticus, and Related Vibrio Species , 1970, Journal of bacteriology.

[158]  S. On.  Taxonomy of Campylobacter, Arcobacter, Helicobacter and related bacteria: current status, future prospects and immediate concerns , 2001, Symposium series.

[159]  H. Reichenbach,et al.  Molecular evidence for association between the sphingobacterium-like organism "Candidatus comitans" and the myxobacterium Chondromyces crocatus , 1997, Applied and environmental microbiology.

[160]  H. Sahm,et al.  The Genus Zymomonas , 2006 .

[161]  R Amann,et al.  Ribosomal RNA-targeted nucleic acid probes for studies in microbial ecology. , 2000, FEMS microbiology reviews.

[162]  W. Ludwig,et al.  Gram-positive bacteria: possible photosynthetic ancestry. , 1984, Science.

[163]  N. Moran,et al.  Genetics, physiology, and evolutionary relationships of the genus Buchnera: intracellular symbionts of aphids. , 1995, Annual review of microbiology.

[164]  D. A. Palmieri,et al.  The genome sequence of the plant pathogen Xylella fastidiosa , 2000, Nature.

[165]  C. Woese,et al.  Phylogenetic Relationships Among the Sulfate Respiring Bacteria, Myxobacteria and Purple Bacteria , 1985 .

[166]  Alfred M. Spormann,et al.  Gliding Motility in Bacteria: Insights from Studies ofMyxococcus xanthus , 1999, Microbiology and Molecular Biology Reviews.

[167]  N. Pace,et al.  Campylobacter pylori, the spiral bacterium associated with human gastritis, is not a true Campylobacter sp , 1987, Journal of bacteriology.

[168]  P. Vandamme,et al.  Taxonomy of the Helicobacter Genus , 2001 .

[169]  J. Coates,et al.  Dechloromonas agitata gen. nov., sp. nov. and Dechlorosoma suillum gen. nov., sp. nov., two novel environmentally dominant (per)chlorate-reducing bacteria and their phylogenetic position. , 2001, International journal of systematic and evolutionary microbiology.

[170]  H. Reichenbach,et al.  Myxobacteria, producers of novel bioactive substances , 2001, Journal of Industrial Microbiology and Biotechnology.

[171]  Nina Springer,et al.  Comparative Sequence Analysis of 23S rRNA from Proteobacteria , 1995 .

[172]  George E. Fox,et al.  Comparative Cataloging of 16S Ribosomal Ribonucleic Acid: Molecular Approach to Procaryotic Systematics , 1977 .

[173]  E Broda,et al.  The Evolution of the Bioenergetic Processes: By E. Broda. Pp 210. Pergamon Press, Oxford. 1975. $20.00 , 1976 .

[174]  T. Fukatsu,et al.  The Secondary Endosymbiotic Bacterium of the Pea Aphid Acyrthosiphon pisum (Insecta: Homoptera) , 2000, Applied and Environmental Microbiology.

[175]  D. Lovley,et al.  Sulfurospirillum barnesii sp. nov. and Sulfurospirillum arsenophilum sp. nov., new members of the Sulfurospirillum clade of the epsilon Proteobacteria. , 1999, International journal of systematic bacteriology.

[176]  B. Patel,et al.  Amaricoccus gen. nov., a gram-negative coccus occurring in regular packages or tetrads, isolated from activated sludge biomass, and descriptions of Amaricoccus veronensis sp. nov., Amaricoccus tamworthensis sp. nov., Amaricoccus macauensis sp. nov., and Amaricoccus kaplicensis sp. nov. , 1997, International journal of systematic bacteriology.

[177]  S Kaplan,et al.  Physical and genetic mapping of the Rhodobacter sphaeroides 2.4.1 genome: presence of two unique circular chromosomes , 1989, Journal of bacteriology.

[178]  W. Dawid.  Biology and global distribution of myxobacteria in soils. , 2000, FEMS microbiology reviews.

[179]  P. Vos,et al.  Intra- and Intergeneric Similarities of Pseudomonas and Xanthomonas Ribosomal Ribonucleic Acid Cistrons , 1983 .

[180]  D. Fredricks.  Introduction to the Rickettsiales and Other Intracellular Prokaryotes , 2006 .

[181]  H. Harmsen,et al.  Molecular ecology of microbes: a review of promises, pitfalls and true progress. , 1994 .

[182]  P. Vos,et al.  Genotypic Relationships and Taxonomic Localization of Unclassified Pseudomonas and Pseudomonas-Like Strains by Deoxyribonucleic Acid:Ribosomal Ribonucleic Acid Hybridizations , 1989 .

[183]  E. Stackebrandt,et al.  Characterization of N2O-producing Xanthomonas-like isolates from biofilters as Stenotrophomonas nitritireducens sp. nov., Luteimonas mephitis gen. nov., sp. nov. and Pseudoxanthomonas broegbernensis gen. nov., sp. nov. , 2000, International journal of systematic and evolutionary microbiology.

[184]  P. Vos,et al.  Ribosomal ribonucleic acid cistron similarities of phytopathogenic Pseudomonas species , 1985 .

[185]  C. Woese,et al.  Genetic transformation and phylogeny of bacterial symbionts from tsetse , 1993, Insect molecular biology.

[186]  P. Vandamme,et al.  Burkholderia cepacia - Friend and foe. , 2000 .

[187]  C. W. Moss,et al.  Isoprenoid quinones of Campylobacter cryaerophila, C. cinaedi, C. fennelliae, C. hyointestinalis, C. pylori, and "C. upsaliensis" , 1990, Journal of clinical microbiology.

[188]  W. Doolittle,et al.  Has the endosymbiont hypothesis been proven? , 1982, Microbiological reviews.

[189]  K. Kersters,et al.  Intra- and intergeneric similarities of the Bordetella ribosomal ribonucleic acid cistrons: proposal for a new family, Alcaligenaceae , 1986 .

[190]  B. Jarvis,et al.  Intra- and Intergeneric Similarities between the Ribosomal Ribonucleic Acid Cistrons of Rhizobium and Bradyrhizobium Species and Some Related Bacteria , 1986 .

[191]  A. Steigerwalt,et al.  Proposals to unify the genera Bartonella and Rochalimaea, with descriptions of Bartonella quintana comb. nov., Bartonella vinsonii comb. nov., Bartonella henselae comb. nov., and Bartonella elizabethae comb. nov., and to remove the family Bartonellaceae from the order Rickettsiales. , 1993, International journal of systematic bacteriology.

[192]  J. Kuever,et al.  Thiomicrospira kuenenii sp. nov. and Thiomicrospira frisia sp. nov., two mesophilic obligately chemolithoautotrophic sulfur-oxidizing bacteria isolated from an intertidal mud flat. , 1999, International journal of systematic bacteriology.

[193]  M. Gray.  Rickettsia, typhus and the mitochondrial connection , 1998, Nature.

[194]  F. Dewhirst,et al.  Recommended minimal standards for describing new species of the genus Helicobacter. , 2000, International journal of systematic and evolutionary microbiology.

[195]  K. Schleifer,et al.  Phylogeny of the family Halomonadaceae based on 23S and 165 rDNA sequence analyses. , 2002, International journal of systematic and evolutionary microbiology.

[196]  Benjamin L. King,et al.  Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori , 1999, Nature.

[197]  Searching for predominant soil bacteria: 16S rDNA cloning versus strain cultivation. , 1999, FEMS microbiology ecology.

[198]  K. Schleifer,et al.  Recent Changes in the Classification of the Pseudomonads: an Overview , 1996 .

[199]  W. Goebel,et al.  Intracellular endosymbiotic bacteria of Camponotus species (carpenter ants): systematics, evolution and ultrastructural characterization , 1996, Molecular microbiology.

[200]  M. Wagner,et al.  The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach. , 2002, Systematic and applied microbiology.

[201]  K. Timmis,et al.  Alcalilimnicola halodurans gen. nov., sp. nov., an alkaliphilic, moderately halophilic and extremely halotolerant bacterium, isolated from sediments of soda-depositing Lake Natron, East Africa Rift Valley. , 2001, International journal of systematic and evolutionary microbiology.

[202]  B. Jørgensen,et al.  Dense populations of a giant sulfur bacterium in Namibian shelf sediments. , 1999, Science.

[203]  E. Stackebrandt,et al.  Proteobacteria classis nov., a Name for the Phylogenetic Taxon That Includes the “Purple Bacteria and Their Relatives” , 1988 .

[204]  T. Meyer,et al.  Cytochromes C2 sequence variation among the recognised species of purple nonsulphur photosynthetic bacteria , 1979, Nature.

[205]  K. Hamana,et al.  Polyamine distribution patterns serve as a phenotypic marker in the chemotaxonomy of the Proteobacteria , 1993 .

[206]  N. Moran,et al.  Phylogenetic relationships of the endosymbionts of mealybugs (Homoptera: Pseudococcidae) based on 16S rDNA sequences. , 1992, Molecular phylogenetics and evolution.

[207]  J. Young,et al.  Implications of alternative classifications and horizontal gene transfer for bacterial taxonomy. , 2001, International journal of systematic and evolutionary microbiology.

[208]  B. Barrell,et al.  The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences , 2000, Nature.

[209]  T. Lessie,et al.  Multiple replicons constituting the genome of Pseudomonas cepacia 17616 , 1994, Journal of bacteriology.

[210]  J. Imhoff,et al.  Reclassification of species of the spiral-shaped phototrophic purple non-sulfur bacteria of the alpha-Proteobacteria: description of the new genera Phaeospirillum gen. nov., Rhodovibrio gen. nov., Rhodothalassium gen. nov. and Roseospira gen. nov. as well as transfer of Rhodospirillum fulvum to Phae , 1998, International journal of systematic bacteriology.

[211]  W. Lubitz,et al.  Classification and identification of bacteria: current approaches to an old problem. Overview of methods used in bacterial systematics. , 1996, Journal of biotechnology.

[212]  E. Wang,et al.  Novel nitrogen-fixing acetic acid bacteria, Gluconacetobacter johannae sp. nov. and Gluconacetobacter azotocaptans sp. nov., associated with coffee plants. , 2001, International journal of systematic and evolutionary microbiology.

[213]  B. Manning,et al.  Genomic complexity and plasticity of Burkholderia cepacia. , 1996, FEMS microbiology letters.

[214]  M. O. Dayhoff,et al.  Origins of prokaryotes, eukaryotes, mitochondria, and chloroplasts. , 1978, Science.

[215]  P. Vandamme,et al.  Globicatella sulfidifaciens sp. nov., isolated from purulent infections in domestic animals. , 2001, International journal of systematic and evolutionary microbiology.

[216]  E. Stackebrandt,et al.  Nautilia lithotrophica gen. nov., sp. nov., a thermophilic sulfur-reducing epsilon-proteobacterium isolated from a deep-sea hydrothermal vent. , 2002, International journal of systematic and evolutionary microbiology.

[217]  F. Rainey,et al.  Thioalkalimicrobium aerophilum gen. nov., sp. nov. and Thioalkalimicrobium sibericum sp. nov., and Thioalkalivibrio versutus gen. nov., sp. nov., Thioalkalivibrio nitratis sp.nov., novel and Thioalkalivibrio denitrificancs sp. nov., novel obligately alkaliphilic and obligately chemolithoautotrophic , 2001, International journal of systematic and evolutionary microbiology.

[218]  Y. van de Peer,et al.  Pelistega europaea gen. nov., sp. nov., a bacterium associated with respiratory disease in pigeons: taxonomic structure and phylogenetic allocation. , 1998, International journal of systematic bacteriology.

[219]  I. Yano,et al.  Transfer of Two Burkholderia and An Alcaligenes Species to Ralstonia Gen. Nov. , 1995, Microbiology and immunology.

[220]  M. Gillis,et al.  Intra- and Intergeneric Similarities of the Ribosomal Ribonucleic Acid Cistrons of Acetobacter and Gluconobacter , 1980 .

[221]  G J Olsen,et al.  Sulfur-oxidizing bacterial endosymbionts: analysis of phylogeny and specificity by 16S rRNA sequences , 1988, Journal of bacteriology.

[222]  J. Singer,et al.  Additional Evidence that Juvenile Oyster Disease Is Caused by a Member of the Roseobacter Group and Colonization of Nonaffected Animals by Stappia stellulata-Like Strains , 2000, Applied and Environmental Microbiology.

[223]  J. Fuhrman,et al.  Microbial Desulfurization of a Crude Oil Middle-Distillate Fraction: Analysis of the Extent of Sulfur Removal and the Effect of Removal on Remaining Sulfur , 1999, Applied and Environmental Microbiology.