1H NMR To Evaluate the Metabolome of Bronchoalveolar Lavage Fluid (BALf) in Bronchiolitis Obliterans Syndrome (BOS): Toward the Development of a New Approach for Biomarker Identification.

This report describes the application of NMR spectroscopy to the profiling of metabolites in bronchoalveolar lavage fluid (BALf) of lung transplant recipients without bronchiolitis obliterans syndrome (BOS) (stable, S, n = 10), and with BOS at different degrees of severity (BOS 0p, n = 10; BOS I, n = 10). Through the fine-tuning of a number of parameters concerning both sample preparation/processing and variations of spectra acquisition modes, an efficient and reproducible protocol was designed for the screening of metabolites in a pulmonary fluid that should reflect the status of airway inflammation/injury. Exploiting the combination of mono- and bidimensional NMR experiments, 38 polar metabolites, including amino acids, Krebs cycle intermediates, mono- and disaccharides, nucleotides, and phospholipid precursors, were unequivocally identified. To determine which signature could be correlated with the onset of BOS, the metabolites' content of the above recipients was analyzed by multivariate (PCA and OPLS-DA) statistical methods. PCA analysis (almost) totally differentiated S from BOS I, and this discrimination was significantly improved by the application of OPLS-DA, whose model was characterized by excellent fit and prediction values (R2 = 0.99 and Q2 = 0.88). The analysis of S vs BOS 0p and of BOS 0p vs BOS I samples showed a clear discrimination of considered cohorts, although with a poorer efficiency compared to those measured for S vs BOS I patients. The data shown in this work assess the suitability of the NMR approach in monitoring different pathological lung conditions.

[1]  P. Iadarola,et al.  1H NMR To Explore the Metabolome of Exhaled Breath Condensate in α1-Antitrypsin Deficient Patients: A Pilot Study. , 2016, Journal of proteome research.

[2]  R. Robitaille,et al.  Metabolomics: Perspectives on potential biomarkers in organ transplantation and immunosuppressant toxicity. , 2016, Clinical biochemistry.

[3]  R. K. Sharma,et al.  NMR-Based Metabolic Snapshot from Minibronchoalveolar Lavage Fluid: An Approach To Unfold Human Respiratory Metabolomics. , 2016, Journal of proteome research.

[4]  L. Tenori,et al.  Performance Assessment in Fingerprinting and Multi Component Quantitative NMR Analyses. , 2015, Analytical Chemistry.

[5]  David S. Wishart,et al.  MetaboAnalyst 3.0—making metabolomics more meaningful , 2015, Nucleic Acids Res..

[6]  P. Tsao,et al.  Use of Nuclear Magnetic Resonance-Based Metabolomics to Characterize the Biochemical Effects of Naphthalene on Various Organs of Tolerant Mice , 2015, PloS one.

[7]  B. F. Nobakht M. Gh,et al.  The metabolomics of airway diseases, including COPD, asthma and cystic fibrosis , 2015, Biomarkers : biochemical indicators of exposure, response, and susceptibility to chemicals.

[8]  O. Mortensen,et al.  Physiological role of taurine – from organism to organelle , 2015, Acta physiologica.

[9]  G. Verleden,et al.  Differential Cytokine, Chemokine and Growth Factor Expression in Phenotypes of Chronic Lung Allograft Dysfunction , 2015, Transplantation.

[10]  C. Lin,et al.  Characterization of the biochemical effects of naphthalene on the mouse respiratory system using NMR‐based metabolomics , 2014, Journal of applied toxicology : JAT.

[11]  C. Singh,et al.  Metabolic profiling in human lung injuries by high-resolution nuclear magnetic resonance spectroscopy of bronchoalveolar lavage fluid (BALF) , 2013, Metabolomics.

[12]  C. Singh,et al.  Mini-bronchoalveolar lavage fluid can be used for biomarker identification in patients with lung injury by employing 1H NMR spectroscopy , 2013, Critical Care.

[13]  David S. Wishart,et al.  HMDB 3.0—The Human Metabolome Database in 2013 , 2012, Nucleic Acids Res..

[14]  I. Namer,et al.  The assessment of the quality of the graft in an animal model for lung transplantation using the metabolomics 1H high‐resolution magic angle spinning NMR spectroscopy , 2012, Magnetic resonance in medicine.

[15]  David S. Wishart,et al.  MetaboAnalyst 2.0—a comprehensive server for metabolomic data analysis , 2012, Nucleic Acids Res..

[16]  W. Gerthoffer,et al.  Targeting the restricted α-subunit repertoire of airway smooth muscle GABAA receptors augments airway smooth muscle relaxation. , 2012, American journal of physiology. Lung cellular and molecular physiology.

[17]  A. Fabiano,et al.  Metabolomic analysis of bronchoalveolar lavage fluid in preterm infants complicated by respiratory distress syndrome: preliminary results , 2011, The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians.

[18]  David S. Wishart,et al.  MetaboAnalyst: a web server for metabolomic data analysis and interpretation , 2009, Nucleic Acids Res..

[19]  T. M. O’Connell,et al.  Metabolomic analysis of bronchoalveolar lavage fluid from cystic fibrosis patients , 2009, Biomarkers : biochemical indicators of exposure, response, and susceptibility to chemicals.

[20]  E. Hoffmann,et al.  Cell volume regulation: physiology and pathophysiology , 2008, Acta physiologica.

[21]  David S. Wishart,et al.  HMDB: a knowledgebase for the human metabolome , 2008, Nucleic Acids Res..

[22]  A. Fietta,et al.  Bronchoalveolar lavage fluid proteome in bronchiolitis obliterans syndrome: possible role for surfactant protein A in disease onset. , 2007, The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation.

[23]  T. Ebbels,et al.  Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts , 2007, Nature Protocols.

[24]  Ying Zhang,et al.  HMDB: the Human Metabolome Database , 2007, Nucleic Acids Res..

[25]  M. Hlastala,et al.  Measuring airway exchange of endogenous acetone using a single-exhalation breathing maneuver. , 2006, Journal of applied physiology.

[26]  F. Martinez,et al.  Prognostic value of bronchiolitis obliterans syndrome stage 0-p in single-lung transplant recipients. , 2005, American journal of respiratory and critical care medicine.

[27]  A. Lane,et al.  Improving NMR sensitivity in room temperature and cooled probes with dipolar ions. , 2005, Journal of magnetic resonance.

[28]  J. Griffin,et al.  Characterization of the biochemical effects of 1-nitronaphthalene in rats using global metabolic profiling by NMR spectroscopy and pattern recognition , 2005, Biomarkers : biochemical indicators of exposure, response, and susceptibility to chemicals.

[29]  R. Strieter,et al.  Bronchiolitis obliterans syndrome complicating lung or heart-lung transplantation. , 2003, Seminars in respiratory and critical care medicine.

[30]  Lynch Rd,et al.  Emerging infections in intensive care units. , 2003 .

[31]  Richard C Boucher,et al.  Effects of reduced mucus oxygen concentration in airway Pseudomonas infections of cystic fibrosis patients. , 2002, The Journal of clinical investigation.

[32]  J. Vincent,et al.  Lactate production by the lungs in acute lung injury. , 1997, American journal of respiratory and critical care medicine.

[33]  J. Casazza,et al.  The metabolism of acetone in rat. , 1984, The Journal of biological chemistry.

[34]  P. Paul,et al.  Plasma acetone metabolism in the fasting human. , 1979, The Journal of clinical investigation.

[35]  J. Fischer,et al.  Amino Acid Derangements in Patients With Sepsis: Treatment With Branched Chain Amino Acid Rich Infusions , 1978, Annals of surgery.

[36]  T. Bathen,et al.  High-resolution magic-angle-spinning NMR spectroscopy of intact tissue. , 2015, Methods in molecular biology.

[37]  I. H. Lambert Regulation of the Cellular Content of the Organic Osmolyte Taurine in Mammalian Cells , 2004, Neurochemical Research.

[38]  P. K. Glasoe,et al.  USE OF GLASS ELECTRODES TO MEASURE ACIDITIES IN DEUTERIUM OXIDE1,2 , 1960 .