State-of-the-art of differential sensing techniques in analytical sciences

Abstract In the field of molecular recognition, classical sensing methods, motivated by the lock-and-key principle, require highly selective receptors for detecting specific analytes. However, due to the high selectivity and high specificity of the receptors required for detection of the target analytes, differential sensing has emerged as a promising alternative for addressing the deficiencies of the traditional chemosensing approaches. This review focuses on the state-of-the-art approaches for molecular sensing and discusses the current status of differential sensing routines in the context of recent advances for application in diverse fields. The essential criteria for excellent differential sensing array systems are systematically reviewed, and the conceptual differences between differential sensing and traditional chemosensing methods in the identification and detection of target analytes are highlighted. The use of multivariate statistical techniques in data mining, analysis, interpretation for differential sensing, and the advantages, disadvantages, and limitations of each chemometric technique are discussed.

[1]  Eric V Anslyn,et al.  Sensing A Paradigm Shift in the Field of Molecular Recognition: From Selective to Differential Receptors. , 2001, Angewandte Chemie.

[2]  Kenneth S Suslick,et al.  A colorimetric sensor array for organics in water. , 2005, Journal of the American Chemical Society.

[3]  X. Qu,et al.  A DNA-Based Label-Free Artificial Tongue for Pattern Recognition of Metal Ions. , 2017, Chemistry.

[4]  K. Suslick,et al.  Chemically responsive nanoporous pigments: colorimetric sensor arrays and the identification of aliphatic amines. , 2008, Langmuir : the ACS journal of surfaces and colloids.

[5]  Eric V Anslyn,et al.  Differential receptor arrays and assays for solution-based molecular recognition. , 2006, Chemical Society reviews.

[6]  Manabu Kano,et al.  A new multivariate statistical process monitoring method using principal component analysis , 2001 .

[7]  Kenneth S. Suslick,et al.  Portable Optoelectronic Nose for Monitoring Meat Freshness , 2016 .

[8]  K. Jolliffe,et al.  Fluorescent sensing arrays for cations and anions. , 2017, The Analyst.

[9]  S. Fletcher,et al.  Protein recognition and denaturation by self-assembling fragments on a DNA quadruplex scaffold. , 2007, Angewandte Chemie.

[10]  Kenneth S Suslick,et al.  Colorimetric detection and identification of natural and artificial sweeteners. , 2009, Analytical chemistry.

[11]  D. Margulies,et al.  Protein recognition by an ensemble of fluorescent DNA G-quadruplexes. , 2009, Angewandte Chemie.

[12]  Sichun Zhang,et al.  Colorimetric sensor array with unmodified noble metal nanoparticles for naked-eye detection of proteins and bacteria. , 2015, The Analyst.

[13]  Eric V Anslyn,et al.  Guidelines for pattern recognition using differential receptors and indicator displacement assays. , 2009, The Journal of organic chemistry.

[14]  Tsuyoshi Minami,et al.  Sensing of carboxylate drugs in urine by a supramolecular sensor array. , 2013, Journal of the American Chemical Society.

[15]  Kay Severin,et al.  A chemosensor array for the colorimetric identification of 20 natural amino acids. , 2005, Journal of the American Chemical Society.

[16]  Shahidan M. Abdullah,et al.  An overview of principal component analysis , 2013 .

[17]  Gang Zou,et al.  Polydiacetylene-based colorimetric sensor microarray for volatile organic compounds , 2010 .

[18]  Mei Yang,et al.  A novel chemical detector using colorimetric sensor array and pattern recognition methods for the concentration analysis of NH3. , 2010, The Review of scientific instruments.

[19]  Hildegarde Heymann,et al.  Pattern-based discrimination of organic acids and red wine varietals by arrays of synthetic receptors , 2012 .

[20]  L. Lieu,et al.  Predicting the Composition of Red Wine Blends Using an Array of Multicomponent Peptide-Based Sensors , 2015, Molecules.

[21]  Yuyang Jiang,et al.  Fluorescence array-based sensing of metal ions using conjugated polyelectrolytes. , 2015, ACS applied materials & interfaces.

[22]  M. Meyyappan,et al.  Simulation of Graphene Field-Effect Transistor Biosensors for Bacterial Detection , 2018, Sensors.

[23]  Leo A. Joyce,et al.  Pattern-based recognition for the rapid determination of identity, concentration, and enantiomeric excess of subtly different threo diols. , 2009, Journal of the American Chemical Society.

[24]  S. Shinkai,et al.  Saccharide Sensing with Molecular Receptors Based on Boronic Acid , 1996 .

[25]  Zulfiqur Ali,et al.  Data analysis for electronic nose systems , 2006 .

[26]  K. Suslick,et al.  A colorimetric sensor array for identification of toxic gases below permissible exposure limits. , 2010, Chemical communications.

[27]  J. McDevitt,et al.  A multicomponent sensing ensemble in solution: differentiation between structurally similar analytes. , 2003, Angewandte Chemie.

[28]  Kenneth S Suslick,et al.  Differential sensing of sugars by colorimetric arrays. , 2010, Current opinion in chemical biology.

[29]  M. Nitz,et al.  Pattern-based recognition of heparin contaminants by an array of self-assembling fluorescent receptors. , 2009, Angewandte Chemie.

[30]  L. J. Prins,et al.  Reversible control over the valency of a nanoparticle-based supramolecular system. , 2012, Journal of the American Chemical Society.

[31]  F. Diederich,et al.  Complexation of Neutral Molecules by Cyclophane Hosts , 1988 .

[32]  A. Ellington,et al.  Differential array sensing for cancer cell classification and novelty detection. , 2017, Organic & biomolecular chemistry.

[33]  Ariel E. Fenster,et al.  A useful model for the "lock and key" analogy , 1984 .

[34]  Multi-analyte detection of chemical species using a conducting polymer nanowire-based sensor array platform , 2015 .

[35]  Sara Stewart,et al.  The use of principal component analysis and discriminant analysis in differential sensing routines. , 2014, Chemical Society reviews.

[36]  Yanhua Dong,et al.  Differentiation of proteins and cancer cells using metal oxide and metal nanoparticles-quantum dots sensor array , 2017 .

[37]  Ying Zhou,et al.  Fluorescent and colorimetric chemosensors for detection of nucleotides, FAD and NADH: highlighted research during 2004-2010. , 2011, Chemical Society reviews.

[38]  K. Severin,et al.  Sensing of peptide hormones with dynamic combinatorial libraries of metal-dye complexes: the advantage of time-resolved measurements. , 2009, Organic & biomolecular chemistry.

[39]  Chun Xing Li,et al.  A simple approach for the discrimination of nucleotides based on a water-soluble polythiophene derivative. , 2009, Chemical communications.

[40]  Subinoy Rana,et al.  Sensing of proteins in human serum using conjugates of nanoparticles and green fluorescent protein. , 2009, Nature chemistry.

[41]  Chen Zhang,et al.  Colorimetric sensor array for soft drink analysis. , 2007, Journal of agricultural and food chemistry.

[42]  A. Boisen,et al.  Development of the colorimetric sensor array for detection of explosives and volatile organic compounds in air , 2010, Defense + Commercial Sensing.

[43]  Vincent M Rotello,et al.  Rapid and efficient identification of bacteria using gold-nanoparticle-poly(para-phenyleneethynylene) constructs. , 2008, Angewandte Chemie.

[44]  Xingyi Huang,et al.  Probing the Reactions of Colorimetric Sensor Array and Volatile Organic Compounds Using Time-Dependent Density-Functional Theory , 2014 .

[45]  Manuel A Palacios,et al.  Fluorescence sensor array for metal ion detection based on various coordination chemistries: general performance and potential application. , 2008, Analytical chemistry.

[46]  J. McDevitt,et al.  Differential receptors create patterns diagnostic for ATP and GTP. , 2003, Journal of the American Chemical Society.

[47]  John T McDevitt,et al.  A differential array of metalated synthetic receptors for the analysis of tripeptide mixtures. , 2005, Journal of the American Chemical Society.

[48]  Katharine L. Diehl,et al.  Differential sensing of oils by conjugates of serum albumins and 9,10-distyrylanthracene probes: a cautionary tale , 2017 .

[49]  V. Rotello,et al.  Colorimetric protein sensing using catalytically amplified sensor arrays. , 2012, Small.

[50]  Differentiation and Identification of Cachaça Wood Extracts Using Peptide-Based Receptors and Multivariate Data Analysis. , 2017, ACS sensors.

[51]  Sichun Zhang,et al.  Multidimensional colorimetric sensor array for discrimination of proteins. , 2016, Biosensors & bioelectronics.

[52]  Lik Hang Yuen,et al.  Large-Scale Detection of Metals with a Small Set of Fluorescent DNA-Like Chemosensors , 2014, Journal of the American Chemical Society.

[53]  A. Ellington,et al.  A pattern recognition based fluorescence quenching assay for the detection and identification of nitrated explosive analytes. , 2008, Chemistry.

[54]  M. Shamsipur,et al.  Development of an optical sensor for determination of zinc by application of PC-ANN , 2011 .

[55]  V. Rotello,et al.  Rapid phenotyping of cancer stem cells using multichannel nanosensor arrays. , 2018, Nanomedicine : nanotechnology, biology, and medicine.

[56]  William J Peveler,et al.  Selectivity and Specificity: Pros and Cons in Sensing. , 2016, ACS sensors.

[57]  K. M. Koczula,et al.  Lateral flow assays , 2016, Essays in biochemistry.

[58]  Jiewen Zhao,et al.  Determination of pork spoilage by colorimetric gas sensor array based on natural pigments. , 2014, Food chemistry.

[59]  D. Auguste,et al.  Pattern-based sensing of triple negative breast cancer cells with dual-ligand cofunctionalized gold nanoclusters. , 2017, Biomaterials.

[60]  Avijit Sen,et al.  Towards the development of a portable device for the monitoring of gaseous toxic industrial chemicals based on a chemical sensor array , 2008 .

[61]  Alireza Mehridehnavi,et al.  A Comprehensive Comparison of Different Clustering Methods for Reliability Analysis of Microarray Data , 2013, Journal of medical signals and sensors.

[62]  Dong Sub Kim,et al.  Expanded Porphyrin-Anion Supramolecular Assemblies: Environmentally Responsive Sensors for Organic Solvents and Anions. , 2015, Journal of the American Chemical Society.

[63]  Leo A. Joyce,et al.  Uses of Differential Sensing and Arrays in Chemical Analysis , 2012 .

[64]  B. Rout,et al.  Pattern-Generating Unimolecular Sensors: For Future Differential Sensing and Molecular Computing , 2017, Synlett.

[65]  R. Krämer,et al.  Pattern-based sensing of sulfated glycosaminoglycans with a dynamic mixture of iron complexes. , 2010, Organic & biomolecular chemistry.

[66]  G. Woods,et al.  Times to Detection of Bacteria and Yeasts in BACTEC 9240 Blood Culture Bottles , 1999, Journal of Clinical Microbiology.

[67]  Byron E. Collins,et al.  Combining Molecular Recognition, Optical Detection, and Chemometric Analysis , 2007 .

[68]  Xin Wu,et al.  Selective sensing of saccharides using simple boronic acids and their aggregates. , 2013, Chemical Society reviews.

[69]  Hildegarde Heymann,et al.  Discrimination of flavonoids and red wine varietals by arrays of differential peptidic sensors , 2011 .

[70]  Yanhua Dong,et al.  Colorimetric Sensor Array Based on Gold Nanoparticles with Diverse Surface Charges for Microorganisms Identification. , 2017, Analytical chemistry.

[71]  Subinoy Rana,et al.  Array-based sensing of metastatic cells and tissues using nanoparticle-fluorescent protein conjugates. , 2012, ACS nano.

[72]  Jie Gao,et al.  Pattern-based sensing of short oligodeoxynucleotides with palladium-dye complexes. , 2010, Chemical communications.

[73]  K. Suslick,et al.  Identification of Nanoparticles with a Colorimetric Sensor Array , 2016 .

[74]  Morteza Mahmoudi,et al.  Themed Issue: Chemical and Biological Detection Chemical Society Reviews Optical Sensor Arrays for Chemical Sensing: the Optoelectronic Nose , 2022 .

[75]  Reza Ghodssi,et al.  An electrochemical sensor for selective TNT sensing based on Tobacco mosaic virus-like particle binding agents. , 2014, Chemical communications.

[76]  D. Reinhoudt,et al.  Cross-Reactive Sensor Array for Metal Ion Sensing Based on Fluorescent SAMs , 2007, Sensors.

[77]  Tadeusz Pustelny,et al.  Multivariate Analysis in Gas Sensing Applications , 2008 .

[78]  E. Anslyn,et al.  Pattern recognition based identification of nitrated explosives , 2008 .

[79]  B. McManus,et al.  Plasma protein biosignatures for detection of cardiac allograft vasculopathy. , 2013, The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation.

[80]  H. Schneider Limitations and Extensions of the Lock-and-Key Principle: Differences between Gas State, Solution and Solid State Structures , 2015, International journal of molecular sciences.

[81]  K. Héberger,et al.  Supervised pattern recognition in food analysis. , 2007, Journal of chromatography. A.

[82]  Xiao-Gang Luo,et al.  Development of a colorimetric sensor array for the discrimination of Chinese liquors based on selected volatile markers determined by GC-MS. , 2014, Journal of agricultural and food chemistry.

[83]  Karl J. Wallace,et al.  A cross reactive sensor array to probe divalent metal ions. , 2015, Chemical communications.

[84]  William J Peveler,et al.  Multichannel Detection and Differentiation of Explosives with a Quantum Dot Array. , 2016, ACS nano.

[85]  A. Ellington,et al.  Differential sensing of MAP kinases using SOX-peptides. , 2014, Angewandte Chemie.

[86]  P. Li,et al.  Colorimetric sensor arrays for amines based on responsive lanthanide complex entrapment , 2017 .

[87]  R. Field,et al.  Differential Toll-Like Receptor-Signalling of Burkholderia pseudomallei Lipopolysaccharide in Murine and Human Models , 2015, PloS one.

[88]  M. Adams,et al.  Serum albumins as differential receptors for the discrimination of fatty acids and oils. , 2010, Organic letters.

[89]  Daniel Citterio,et al.  Inkjet-printed paper-based colorimetric sensor array for the discrimination of volatile primary amines. , 2013, Analytical chemistry.

[90]  Kenneth S Suslick,et al.  A Hand-Held Optoelectronic Nose for the Identification of Liquors. , 2017, ACS sensors.

[91]  K. Suslick,et al.  Colorimetric sensor arrays for the analysis of beers: a feasibility study. , 2006, Journal of agricultural and food chemistry.

[92]  Andreas Herrmann,et al.  A Hypothesis-Free Sensor Array Discriminates Whiskies for Brand, Age, and Taste , 2017 .

[93]  Liang Feng,et al.  Colorimetric sensor array for determination and identification of toxic industrial chemicals. , 2010, Analytical chemistry.

[94]  Sichun Zhang,et al.  Protein sensing and cell discrimination using a sensor array based on nanomaterial-assisted chemiluminescence. , 2011, Analytical chemistry.

[95]  Michel José Anzanello,et al.  Performance of some supervised and unsupervised multivariate techniques for grouping authentic and unauthentic Viagra and Cialis , 2014 .

[96]  L. J. Prins,et al.  Pattern-based sensing of nucleotides with functionalized gold nanoparticles. , 2013, Chemical communications.

[97]  Y. Ucal,et al.  Proteomic analysis reveals differential protein expression in variants of papillary thyroid carcinoma , 2017, EuPA open proteomics.

[98]  Manuel A. Palacios,et al.  Rational design of a minimal size sensor array for metal ion detection. , 2008, Journal of the American Chemical Society.

[99]  Manuel A Palacios,et al.  Hydroxyquinolines with extended fluorophores: arrays for turn-on and ratiometric sensing of cations. , 2007, Chemical communications.

[100]  Brian Taba,et al.  The Use of Colorimetric Sensor Arrays to Discriminate between Pathogenic Bacteria , 2013, PloS one.

[101]  A. Hamilton,et al.  Pattern recognition of proteins based on an array of functionalized porphyrins. , 2006, Journal of the American Chemical Society.

[102]  Shannon E. Stitzel,et al.  Cross-reactive chemical sensor arrays. , 2000, Chemical reviews.

[103]  P. Anzenbacher,et al.  Multianalyte sensing of addictive over-the-counter (OTC) drugs. , 2013, Journal of the American Chemical Society.

[104]  T. Nelson,et al.  Cross-reactive conjugated polymers: analyte-specific aggregative response for structurally similar diamines. , 2006, Journal of the American Chemical Society.

[105]  Liang Feng,et al.  An Optoelectronic Nose for Detection of Toxic Gases , 2009, Nature chemistry.

[106]  Vincent M Rotello,et al.  Array-based sensing of proteins using conjugated polymers. , 2007, Journal of the American Chemical Society.

[107]  A. Yang,et al.  Origins of specificity and affinity in antibody–protein interactions , 2014, Proceedings of the National Academy of Sciences.

[108]  He Tian,et al.  Multiplexed photoluminescent sensors: towards improved disease diagnostics. , 2017, Chemical Society reviews.

[109]  Vincent M. Rotello,et al.  Enzyme-amplified array sensing of proteins in solution and in biofluids. , 2010, Journal of the American Chemical Society.

[110]  Gregory A. Bakken,et al.  Computational methods for the analysis of chemical sensor array data from volatile analytes. , 2000, Chemical reviews.

[111]  Vincent M. Rotello,et al.  Array-based sensing of normal, cancerous, and metastatic cells using conjugated fluorescent polymers. , 2010, Journal of the American Chemical Society.

[112]  Wenxuan Zhong,et al.  A colorimetric sensor array for detection and identification of sugars. , 2008, Organic letters.

[113]  V. Rotello,et al.  Differentiation of cancer cell type and phenotype using quantum dot-gold nanoparticle sensor arrays. , 2013, Cancer letters.

[114]  X. Qian,et al.  Cross-reactive sensor arrays for the detection of peptides in aqueous solution by fluorescence spectroscopy. , 2010, Chemistry.

[115]  Jing Li,et al.  A Sensor Array for the Detection and Discrimination of Methane and Other Environmental Pollutant Gases , 2016, Sensors.

[116]  Xi Chen,et al.  A cross-reactive sensor array for the fluorescence qualitative analysis of heavy metal ions. , 2014, Talanta.

[117]  D. Kolpashchikov,et al.  A Differential Fluorescent Receptor for Nucleic Acid Analysis , 2014, Chembiochem : a European journal of chemical biology.

[118]  Richard Axel,et al.  Scents and sensibility: a molecular logic of olfactory perception (Nobel lecture). , 2005, Angewandte Chemie.

[119]  Adil Denizli,et al.  Colorimetric sensor array based on gold nanoparticles and amino acids for identification of toxic metal ions in water. , 2014, ACS applied materials & interfaces.

[120]  X. Qu,et al.  Array-based sensing of proteins and bacteria by using multiple luminescent nanodots as fluorescent probes. , 2014, Small.

[121]  E. Anslyn,et al.  The use of differential receptors to pattern peptide phosphorylation. , 2009, Journal of the American Chemical Society.

[122]  N. Peppas,et al.  Charged poly(N-isopropylacrylamide) nanogels for use as differential protein receptors in a turbidimetric sensor array. , 2017, The Analyst.

[123]  M. Adams,et al.  Differential sensing using proteins: exploiting the cross-reactivity of serum albumin to pattern individual terpenes and terpenes in perfume. , 2009, Journal of the American Chemical Society.

[124]  J. McDevitt,et al.  Differential receptors create patterns that distinguish various proteins. , 2005, Angewandte Chemie.

[125]  Andrew D. Ellington,et al.  Exploration of plasticizer and plastic explosive detection and differentiation with serum albumin cross-reactive arrays , 2012 .

[126]  Eric V. Anslyn,et al.  Array sensing using optical methods for detection of chemical and biological hazards. , 2013, Chemical Society reviews.

[127]  Adam Heller,et al.  Electrochemical glucose sensors and their applications in diabetes management. , 2008, Chemical reviews.

[128]  Ali Yener Mutlu,et al.  Smartphone Based Colorimetric Detection via Machine Learning , 2017, The Analyst.

[129]  Andrea E. Holmes,et al.  Colorimetric Sensor Arrays for the Detection and Identification of Chemical Weapons and Explosives , 2016, Critical reviews in analytical chemistry.

[130]  E. Fischer Some enzyme systems of denervated muscle. , 1948, Archives of physical medicine and rehabilitation.

[131]  Laura Baldini,et al.  Pattern-based detection of different proteins using an array of fluorescent protein surface receptors. , 2004, Journal of the American Chemical Society.

[132]  U. Bunz,et al.  A Polymer/Peptide Complex-Based Sensor Array That Discriminates Bacteria in Urine. , 2017, Angewandte Chemie.

[133]  Silica nanoparticles functionalised with cation coordination sites and fluorophores for the differential sensing of anions in a quencher displacement assay (QDA). , 2011, Chemical communications.

[134]  Yuanli Liu,et al.  An off-the-shelf sensing system for physiological phosphates. , 2014, Chemical communications.

[135]  E. Anslyn Supramolecular analytical chemistry. , 2007, The Journal of organic chemistry.

[136]  Brian Taba,et al.  Colorimetric Sensor Array Allows Fast Detection and Simultaneous Identification of Sepsis-Causing Bacteria in Spiked Blood Culture , 2013, Journal of Clinical Microbiology.

[137]  Eric V Anslyn,et al.  A general approach to differential sensing using synthetic molecular receptors. , 2010, Current opinion in chemical biology.

[138]  Walt,et al.  A combinatorial approach to discover new chelators for optical metal ion sensing , 2000, Analytical chemistry.

[139]  Eric V. Anslyn,et al.  Differential sensing for the regio- and stereoselective identification and quantitation of glycerides , 2015, Proceedings of the National Academy of Sciences.

[140]  Kenneth S Suslick,et al.  Colorimetric sensor arrays for volatile organic compounds. , 2006, Analytical chemistry.

[141]  V. Rotello,et al.  Array-Based Sensing of Whisky: A Whiff of the Spirit World , 2017 .

[142]  V. Rotello,et al.  Chemosensory models: approaches and applications of differential sensing. , 2010, Current opinion in chemical biology.

[143]  Yuexiang Lu,et al.  Fluorescence sensor array based on amino acids-modulating quantum dots for the discrimination of metal ions. , 2017, Analytica chimica acta.

[144]  Xiao Dong,et al.  Colorimetric sensor arrays based on pattern recognition for the detection of nitroaromatic molecules. , 2017, Journal of hazardous materials.

[145]  R M Stuetz,et al.  Use of a chemical sensor array for detecting pollutants in domestic wastewater. , 2002, Water research.

[146]  Gerhard Müller,et al.  Modular Analytical Multicomponent Analysis in Gas Sensor Aarrays , 2006, Sensors (Basel, Switzerland).

[147]  E. Anslyn,et al.  Pattern-based discrimination of enantiomeric and structurally similar amino acids: an optical mimic of the mammalian taste response. , 2006, Journal of the American Chemical Society.

[148]  R. Martínez‐Máñez,et al.  Development of a colorimetric sensor array for squid spoilage assessment. , 2015, Food chemistry.