The carboxypeptidase-like substrate-binding site in Nna1 is essential for the rescue of the Purkinje cell degeneration (pcd) phenotype

The Purkinje cell degeneration (pcd) phenotype is characterized by adult onset neurodegeneration resulting from mutations in Nna1, a gene encoding an intracellular protein with a putative metallocarboxypeptidase domain. As Nna1 is also induced in axotomized motor neurons, the elucidation of its function can shed light on previously unsuspected mechanisms common to degenerative and regenerative responses. Structural modeling revealed that Nna1 and three related gene products constitute a new subfamily of metallocarboxypeptidases with a distinctive substrate-binding site. To test whether the metallocarboxypeptidase domain is functionally essential, transgenic mice were generated that expressed Nna1 or a substrate-binding site mutant of Nna1 selectively in Purkinje cells using the L7/pcp2 promoter. When bred onto a homozygous pcd(3J) background, wild type but not mutant Nna1 rescued ataxic behavior and Purkinje cell loss. Therefore, loss of Nna1 in Purkinje cells leads directly to their degeneration and Nna1's carboxypeptidase domain is essential for survival of these neurons.

[1]  N. Grishin,et al.  Primary structure of carboxypeptidase T: Delineation of functionally relevant features in Zn-carboxypeptidase family , 1992, Journal of protein chemistry.

[2]  J. Morgan,et al.  Regenerating Motor Neurons Express Nna1, a Novel ATP/GTP-Binding Protein Related to Zinc Carboxypeptidases , 2000, Molecular and Cellular Neuroscience.

[3]  Sang J. Chung,et al.  Insight into the stereochemistry in the inhibition of carboxypeptidase A with N-(hydroxyaminocarbonyl)phenylalanine: binding modes of an enantiomeric pair of the inhibitor to carboxypeptidase A. , 2002, Bioorganic & medicinal chemistry.

[4]  Karl Schilling,et al.  Control of segment-like patterns of gene expression in the mouse cerebellum , 1993, Neuron.

[5]  D. Higgins,et al.  T-Coffee: A novel method for fast and accurate multiple sequence alignment. , 2000, Journal of molecular biology.

[6]  Haiyang Li,et al.  Identification of peptides from brain and pituitary of Cpefat/Cpefat mice , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[7]  R. Sidman,et al.  Purkinje cell degeneration (pcd) Phenotypes Caused by Mutations in the Axotomy-Induced Gene, Nna1 , 2002, Science.

[8]  R. J. Mullen,et al.  Retinal degeneration in the pcd cerebellar mutant mouse. II. Electron microscopic analysis , 1982, The Journal of comparative neurology.

[9]  M. Davisson The Jackson Laboratory Mouse Mutant Resource , 1990 .

[10]  W. Lipscomb,et al.  Binding of ligands to the active site of carboxypeptidase A. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[11]  F. Cohen,et al.  An evolutionary trace method defines binding surfaces common to protein families. , 1996, Journal of molecular biology.

[12]  G. Shepherd,et al.  Mitral cell degeneration and sensory function in the neurological mutant mouse Purkinje cell degeneration (PCD) , 1982, Brain Research.

[13]  Philip E. Bourne,et al.  A New Algorithm for the Alignment of Multiple Protein Structures Using Monte Carlo Optimization , 2000, Pacific Symposium on Biocomputing.

[14]  W. Rutter,et al.  Site-directed mutagenesis shows that tyrosine 248 of carboxypeptidase A does not play a crucial role in catalysis , 1985, Nature.

[15]  J. Changeux,et al.  Transsynaptic degeneration 'en cascade' in the cerebellar cortex of staggerer mutant mice. , 1974, Brain research.

[16]  T. Curran,et al.  Disabled-1 acts downstream of Reelin in a signaling pathway that controls laminar organization in the mammalian brain. , 1998, Development.

[17]  J. Bukrinsky,et al.  Native carboxypeptidase A in a new crystal environment reveals a different conformation of the important tyrosine 248. , 1998, Biochemistry.

[18]  R. J. Mullen,et al.  The development and degeneration of Purkinje cells in pcd mutant mice , 1978, The Journal of comparative neurology.

[19]  F. Avilés,et al.  The three‐dimensional structure of human procarboxypeptidase A2. Deciphering the basis of the inhibition, activation and intrinsic activity of the zymogen , 1997, The EMBO journal.

[20]  L. Kelley,et al.  An automated approach for clustering an ensemble of NMR-derived protein structures into conformationally related subfamilies. , 1996, Protein engineering.

[21]  Ilya N. Shindyalov,et al.  DMAPS: a database of multiple alignments for protein structures , 2006, Nucleic Acids Res..

[22]  N. Grishin,et al.  The Zn-peptidase superfamily: functional convergence after evolutionary divergence. , 1999, Journal of molecular biology.

[23]  J. Riordan Functional arginyl residues in carboxypeptidase A. Modification with butanedione. , 1973, Biochemistry.

[24]  R. Sidman,et al.  Degeneration of thalamic neurons in “Purkinje cell degeneration” mutant mice. I. Distribution of neuron loss , 1985, The Journal of comparative neurology.

[25]  F A Quiocho,et al.  Carboxypeptidase A: a protein and an enzyme. , 1971, Advances in protein chemistry.

[26]  R. J. Mullen,et al.  Retinal degeneration in the pcd cerebellar mutant mouse. I. Light microscopic and autoradiographio analysis , 1982, The Journal of comparative neurology.

[27]  R. J. Mullen Site of pcd gene action and Purkinje cell mosaicism in cerebella of chimaeric mice , 1977, Nature.

[28]  R. Minshall,et al.  Kininase I-type carboxypeptidases enhance nitric oxide production in endothelial cells by generating bradykinin B1 receptor agonists. , 2003, American journal of physiology. Heart and circulatory physiology.

[29]  Philip E. Bourne,et al.  CE-MC: a multiple protein structure alignment server , 2004, Nucleic Acids Res..

[30]  E. Mugnaini,et al.  Dynamic organization of developing Purkinje cells revealed by transgene expression. , 1991, Science.

[31]  R. Nitsch,et al.  Identification of neuronal cell death in a model of degeneration in the hippocampus. , 2003, Brain research. Brain research protocols.

[32]  K. Herrup,et al.  Direct correlation between Purkinje and granule cell number in the cerebella of lurcher chimeras and wild-type mice. , 1983, Brain research.

[33]  S. Christakos,et al.  Calcium binding protein (calbindin-D28k) gene expression in the developing and aging mouse cerebellum. , 1990, Brain research. Molecular brain research.

[34]  L. Schmued,et al.  Characterizing cortical neuron injury with fluoro‐jade labeling after a neurotoxic regimen of methamphetamine , 1998, Synapse.

[35]  S. Zackson,et al.  A promoter that drives transgene expression in cerebellar Purkinje and retinal bipolar neurons. , 1990, Science.

[36]  E. Querol,et al.  Metallocarboxypeptidases and their protein inhibitors. Structure, function and biomedical properties. , 2000, Biochimica et biophysica acta.

[37]  W. Lipscomb,et al.  Carboxypeptidase A mechanisms. , 1980, Proceedings of the National Academy of Sciences of the United States of America.

[38]  D C Rees,et al.  Refined crystal structure of carboxypeptidase A at 1.54 A resolution. , 1983, Journal of molecular biology.

[39]  K. J. Lee,et al.  The role of Tyr248 probed by mutant bovine carboxypeptidase A: insight into the catalytic mechanism of carboxypeptidase A. , 2001, Biochemistry.

[40]  S. Snyder,et al.  Enkephalin convertase: purification and characterization of a specific enkephalin-synthesizing carboxypeptidase localized to adrenal chromaffin granules. , 1982, Proceedings of the National Academy of Sciences of the United States of America.

[41]  L. Triarhou Rate of neuronal fallout in a transsynaptic cerebellar model , 1998, Brain Research Bulletin.

[42]  J. Morgan,et al.  Identification of candidate Purkinje cell-specific markers by gene expression profiling in wild-type and pcd(3J) mice. , 2004, Brain research. Molecular brain research.

[43]  A. Spada,et al.  The Purkinje cell degeneration 5J mutation is a single amino acid insertion that destabilizes Nna1 protein , 2006, Mammalian Genome.

[44]  T. Blundell,et al.  Evolutionary trace analysis of TGF-beta and related growth factors: implications for site-directed mutagenesis. , 2000, Protein engineering.

[45]  R. Skidgel Basic carboxypeptidases: regulators of peptide hormone activity. , 1988, Trends in pharmacological sciences.

[46]  R. J. Mullen,et al.  Two new types of retinal degeneration in cerebellar mutant mice , 1975, Nature.

[47]  S. O’Gorman Degeneration of thalamic neurons in “Purkinje cell degeneration” mutant mice. II. Cytology of neuron loss , 1985, The Journal of comparative neurology.

[48]  L. Fricker,et al.  Carboxypeptidases from A to Z: implications in embryonic development and Wnt binding , 2001, Cellular and Molecular Life Sciences CMLS.

[49]  W. Lipscomb,et al.  Binding of D-phenylalanine and D-tyrosine to carboxypeptidase A. , 1989, The Journal of biological chemistry.

[50]  R. J. Mullen,et al.  Purkinje cell degeneration, a new neurological mutation in the mouse. , 1976, Proceedings of the National Academy of Sciences of the United States of America.

[51]  P. Corvol,et al.  Study of asparagine 353 in aminopeptidase A: characterization of a novel motif (GXMEN) implicated in exopeptidase specificity of monozinc aminopeptidases. , 2001, Biochemistry.

[52]  G. Reeke,et al.  The structure of carboxypeptidase A. IX. The x-ray diffraction results in the light of the chemical sequence. , 1969, Proceedings of the National Academy of Sciences of the United States of America.