Metabolic Pathway Data and Application Integration

This paper shows three previous approaches for data integration, Linked Data access and Web Service annotation, and what problems have to be solved in the context of Life Sciences to integrate and use Metabolic Pathway data published as Linked Data.

[1]  Hugh D. Spence,et al.  Minimum information requested in the annotation of biochemical models (MIRIAM) , 2005, Nature Biotechnology.

[2]  C. Bornhovd Semantic metadata for the integration of Web-based data for electronic commerce , 1999, Proceedings of International Workshop on Advance Issues of E-Commerce and Web-Based Information Systems. (Cat. No.PR00334).

[3]  Andreas Langegger Virtual data integration on the web: novel methods for accessing heterogeneous and distributed data with rich semantics , 2008, iiWAS.

[4]  Naser Nematbakhsh,et al.  SUITABILITY OF UML STATE MACHINE FOR MODELING CHOREOGRAPHY OF SERVICES , 2011 .

[5]  Tore Risch,et al.  Distributed data integration by object‐oriented mediator servers , 2001, Concurr. Comput. Pract. Exp..

[6]  Tomasz Ksiezyk,et al.  InfoSleuth: agent-based system for data integration and analysis , 2001, 25th Annual International Computer Software and Applications Conference. COMPSAC 2001.

[7]  Susumu Goto,et al.  The KEGG resource for deciphering the genome , 2004, Nucleic Acids Res..

[8]  Marcus Hutter,et al.  Bayesian DNA copy number analysis , 2009, BMC Bioinformatics.

[9]  Hector Garcia-Molina,et al.  Semistructured Data: The Tsimmis Experience , 1997, ADBIS.

[10]  Nicole Tourigny,et al.  Bio2RDF: Towards a mashup to build bioinformatics knowledge systems , 2008, J. Biomed. Informatics.

[11]  Sarala M. Wimalaratne,et al.  The Systems Biology Graphical Notation , 2009, Nature Biotechnology.

[12]  Laura M. Haas,et al.  The Garlic project , 1996, SIGMOD '96.

[13]  Vipul Kashyap,et al.  Observer: an approach for query processing in global information systems based on interoperation across pre-existing ontologies , 1996, Proceedings First IFCIS International Conference on Cooperative Information Systems.

[14]  Philippe Bonnet,et al.  The distributed information search component (Disco) and the World Wide Web , 1997, SIGMOD '97.

[15]  Vipul Kashyap,et al.  OBSERVER: An Approach for Query Processing in Global Information Systems Based on Interoperation Across Pre-Existing Ontologies , 2000, Distributed and Parallel Databases.

[16]  David R. Karger,et al.  Piggy Bank: Experience the Semantic Web inside your web browser , 2005, J. Web Semant..

[17]  Barry Bishop,et al.  OWLIM: A family of scalable semantic repositories , 2011, Semantic Web.

[18]  Adrian Paschke,et al.  A journey to Semantic Web query federation in the life sciences , 2009, BMC Bioinformatics.

[19]  Silvana Castano,et al.  Semantic integration of heterogeneous information sources , 2001, Data Knowl. Eng..