Constant pressure path integral molecular dynamics studies of quantum effects in the liquid state properties of n-alkanes

A computer simulation study of quantum effects in methane, butane, and octane is presented. Each molecular system is examined at three state points in the liquid region using novel extended system, multiple time step, constant pressure, path integral molecular dynamics methodology. In addition, the results of classical calculations are reported to provide a useful reference. Liquid butane is used as a test case on which to compare the predictions of two empirical force fields, CHARMM22 and AMBER95. Comparisons are made to experiment. Briefly, the models predict that quantum effects lead to an increase in molar volume of approximately 2 cm3/mole (i.e., relative to a classical calculation). However, a slight unphysical hydrogen–deuterium isotope effect is, also, observed. This may be caused by an incorrect parametrization of the anisotropy of the potential or by a reduction in the magnitude of the intermolecular induced dipole-induced dipole dispersion coefficient with increasing isotope mass that has not been parametrized in the force fields. In addition, the results show an interesting zero-point energy effect. The intramolecular regions of the radial distribution function exhibit less structure at lower temperatures than at higher temperatures. This is the inverse of the prediction of the model in the classical limit. The quantum effect occurs because the bulk density decreases faster than the intramolecular degrees of freedom lose zero-point energy as temperature increases in the highly harmonic intramolecular potential model employed in the calculations. Nonetheless, the phenomena is not likely to be an artifact and careful experiments could observe it. Finally, the efficiency of the path molecular dynamics methods employed in the studies are demonstrated on both serial and parallel computers.

[1]  A. Fersht Enzyme structure and mechanism , 1977 .

[2]  Structure and dynamics of bipolarons in liquid ammonia. , 1992, Physical review letters.

[3]  D. Ceperley,et al.  Simulation of quantum many-body systems by path-integral methods , 1984 .

[4]  M. J. Terry,et al.  The densities of liquid argon, krypton xenon, oxygen, nitrogen, carbon monoxide methane, and carbon tetrafluoride along the orthobaric liquid curve , 1969 .

[5]  B. Berne,et al.  A Born–Oppenheimer approximation for path integrals with an application to electron solvation in polarizable fluids , 1993 .

[6]  Johan Åqvist Computer modeling of chemical reactions in enzymes and solutions: A. Warshel (John Wiley amd Sons, New York, 1991) , 1993 .

[7]  A. Narten,et al.  X‐ray diffraction study of some liquid alkanes , 1990 .

[8]  Michiel Sprik,et al.  COMPUTER-SIMULATION OF THE DYNAMICS OF INDUCED POLARIZATION FLUCTUATIONS IN WATER , 1991 .

[9]  N. Meinander,et al.  The effect of the anisotropy of the intermolecular potential on the second pressure virial coefficient of CH4 , 1983 .

[10]  M. Klein,et al.  Nosé-Hoover chains : the canonical ensemble via continuous dynamics , 1992 .

[11]  S. Nosé,et al.  Constant pressure molecular dynamics for molecular systems , 1983 .

[12]  Michiel Sprik,et al.  A polarizable model for water using distributed charge sites , 1988 .

[13]  P. Kollman,et al.  A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules , 1995 .

[14]  Giovanni Ciccotti,et al.  Introduction of Andersen’s demon in the molecular dynamics of systems with constraints , 1983 .

[15]  J. Ilja Siepmann,et al.  Thermodynamic Properties of the Williams, OPLS-AA, and MMFF94 All-Atom Force Fields for Normal Alkanes , 1998 .

[16]  Wilma K. Olson,et al.  The dependence of DNA tertiary structure on end conditions: Theory and implications for topological transitions , 1994 .

[17]  K. Kjaer,et al.  Structural properties of phosphatidylcholine in a monolayer at the air/water interface: Neutron reflection study and reexamination of x-ray reflection measurements. , 1991, Biophysical journal.

[18]  Jianshu Cao,et al.  A new perspective on quantum time correlation functions , 1993 .

[19]  Glenn J. Martyna,et al.  Adiabatic path integral molecular dynamics methods. I. Theory , 1996 .

[20]  Bruce J. Berne,et al.  On the Simulation of Quantum Systems: Path Integral Methods , 1986 .

[21]  Peter G. Wolynes,et al.  Exploiting the isomorphism between quantum theory and classical statistical mechanics of polyatomic fluids , 1981 .

[22]  A. Narten,et al.  X‐ray diffraction study of liquid n‐butane at 140 and 267 K , 1989 .

[23]  R. Wyatt,et al.  Computational approach to the Green function in reactive scattering , 1982 .

[24]  J. A. Barker A quantum‐statistical Monte Carlo method; path integrals with boundary conditions , 1979 .

[25]  Bruce J. Berne,et al.  Path integral Monte Carlo studies of the behavior of excess electrons in simple fluids , 1987 .

[26]  Arieh Warshel,et al.  Computer Modeling of Chemical Reactions in Enzymes and Solutions , 1991 .

[27]  G. Gaines,et al.  Insoluble Monolayers at Liquid-gas Interfaces , 1966 .

[28]  D. Ceperley Path integrals in the theory of condensed helium , 1995 .

[29]  Alexander D. MacKerell,et al.  All-atom empirical potential for molecular modeling and dynamics studies of proteins. , 1998, The journal of physical chemistry. B.

[30]  B. Berne,et al.  Efficient molecular dynamics and hybrid Monte Carlo algorithms for path integrals , 1993 .

[31]  Mark E. Tuckerman,et al.  Reversible multiple time scale molecular dynamics , 1992 .

[32]  M. Klein,et al.  An intermolecular potential for methane , 1981 .

[33]  T. Riste Anharmonic lattices, structural transitions and melting , 1974 .

[34]  D. Hanahan Handbook of lipid research , 1978 .

[35]  Steve Plimpton,et al.  Fast parallel algorithms for short-range molecular dynamics , 1993 .