Global biotic interactions: An open infrastructure to share and analyze species-interaction datasets

[1]  Gary D. Bader,et al.  Dataset Descriptions: HCLS Community Profile , 2015 .

[2]  Dominique Gravel,et al.  mangal - making ecological network analysis simple , 2014, bioRxiv.

[3]  M. Aschan,et al.  Who eats whom in the Barents Sea: a food web topology from plankton to whales , 2014 .

[4]  Patrick R. Leary,et al.  The Encyclopedia of Life v2: Providing Global Access to Knowledge About Life on Earth , 2014, Biodiversity data journal.

[5]  Sarah Faulwetter,et al.  Polytraits: A database on biological traits of marine polychaetes , 2014, Biodiversity data journal.

[6]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[7]  Barry Smith,et al.  The environment ontology: contextualising biological and biomedical entities , 2013, Journal of Biomedical Semantics.

[8]  Jim Webber,et al.  Graph Databases: New Opportunities for Connected Data , 2013 .

[9]  Ethan P. White,et al.  The EcoData Retriever: Improving Access to Existing Ecological Data , 2013, PloS one.

[10]  J. R. Ferrer‐Paris,et al.  Congruence and Diversity of Butterfly-Host Plant Associations at Higher Taxonomic Levels , 2013, PloS one.

[11]  Bert W. Hoeksema,et al.  Global Coordination and Standardisation in Marine Biodiversity through the World Register of Marine Species (WoRMS) and Related Databases , 2013, PloS one.

[12]  David L. Erickson,et al.  Tropical Plant–Herbivore Networks: Reconstructing Species Interactions Using DNA Barcodes , 2013, PloS one.

[13]  P. Roopnarine,et al.  Detailed Food Web Networks of Three Greater Antillean Coral Reef Systems: The Cayman Islands, Cuba, and Jamaica , 2013 .

[14]  Jeffrey T. G. Holmes,et al.  Building a Fisheries Trophic Interaction Database for Management and Modeling Research in the Gulf of Mexico Large Marine Ecosystem , 2013 .

[15]  W. Los,et al.  Biodiversity e‐Science: LifeWatch, the European infrastructure on biodiversity and ecosystem research , 2012 .

[16]  Colt Cook.  The early life history and reproductive biology of Cymothoa excisa, a marine isopod parasitizing Atlantic croaker, (Micropogonias undulatus), along the Texas coast , 2012 .

[17]  John Wieczorek,et al.  Darwin Core: An Evolving Community-Developed Biodiversity Data Standard , 2012, PloS one.

[18]  S. Lewis,et al.  Uberon, an integrative multi-species anatomy ontology , 2012, Genome Biology.

[19]  Jeffrey Heer,et al.  SpanningAspectRatioBank Easing FunctionS ArrayIn ColorIn Date Interpolator MatrixInterpola NumObjecPointI Rectang ISchedu Parallel Pause Scheduler Sequen Transition Transitioner Transiti Tween Co DelimGraphMLCon IData JSONCon DataField DataSc Dat DataSource Data DataUtil DirtySprite LineS RectSprite , 2011 .

[20]  Jarrett E. K. Byrnes,et al.  Climate‐driven increases in storm frequency simplify kelp forest food webs , 2011 .

[21]  B. Raymond,et al.  A Southern Ocean dietary database , 2011 .

[22]  Kevin D. Lafferty,et al.  Food webs including parasites, biomass, body sizes, and life stages for three California/Baja California estuaries , 2011 .

[23]  John Kunze,et al.  DataONE: Data Observation Network for Earth - Preserving Data and Enabling Innovation in the Biological and Environmental Sciences , 2011, D Lib Mag..

[24]  Jeffrey Heer,et al.  D³ Data-Driven Documents , 2011, IEEE Transactions on Visualization and Computer Graphics.

[25]  A. Nekrutenko,et al.  Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences , 2010, Genome Biology.

[26]  Roland Bouman,et al.  Pentaho Solutions: Business Intelligence and Data Warehousing with Pentaho and MySQL , 2009 .

[27]  Mathieu Bastian,et al.  Gephi: An Open Source Software for Exploring and Manipulating Networks , 2009, ICWSM.

[28]  G. Allen,et al.  Freshwater Ecoregions of the World: A New Map of Biogeographic Units for Freshwater Biodiversity Conservation , 2008 .

[29]  S. Jennings,et al.  PREDATOR AND PREY BODY SIZES IN MARINE FOOD WEBS , 2008 .

[30]  C. Marshall.  Encyclopedia of Life , 2008 .

[31]  Jennifer L. Molnar,et al.  Marine Ecoregions of the World: A Bioregionalization of Coastal and Shelf Areas , 2007 .

[32]  A. Longhurst.  Chapter 2 – BIOGEOGRAPHIC PARTITION OF THE OCEAN , 2007 .

[33]  Li Ding,et al.  Using the Semantic Web to Support Ecoinformatics , 2006, AAAI Fall Symposium: Semantic Web for Collaborative Knowledge Acquisition.

[34]  Werner Ulrich,et al.  BODY SIZES OF CONSUMERS AND THEIR RESOURCES , 2005 .

[35]  James Gosling,et al.  The Java Language Specification, 3rd Edition , 2005 .

[36]  Diego P. Vázquez,et al.  Degree distribution in plant–animal mutualistic networks: forbidden links or random interactions? , 2005 .

[37]  A. Rector,et al.  Relations in biomedical ontologies , 2005, Genome Biology.

[38]  Eli Levine,et al.  Webs on the Web (WOW): 3D visualization of ecological networks on the WWW for collaborative research and education , 2004, IS&T/SPIE Electronic Imaging.

[39]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[40]  E. Wilson.  The encyclopedia of life , 2003 .

[41]  M. Diepenbroek,et al.  PANGAEA: an information system for environmental sciences , 2002 .

[42]  G. Powell,et al.  Terrestrial Ecoregions of the World: A New Map of Life on Earth , 2001 .

[43]  Emden R. Gansner,et al.  An open graph visualization system and its applications to software engineering , 2000, Softw. Pract. Exp..

[44]  R. May.  Food webs. , 1983, Science.