Detecting Alzheimer's Disease on Small Dataset: A Knowledge Transfer Perspective

Computer-aided diagnosis (CAD) is an attractive topic in Alzheimer's disease (AD) research. Many algorithms are based on a relatively large training dataset. However, small hospitals are usually unable to collect sufficient training samples for robust classification. Although data sharing is expanding in scientific research, it is unclear whether a model based on one dataset is well suited for other data sources. Using a small dataset from a local hospital and a large shared dataset from the AD neuroimaging initiative, we conducted a heterogeneity analysis and found that different functional magnetic resonance imaging data sources show different sample distributions in feature space. In addition, we proposed an effective knowledge transfer method to diminish the disparity among different datasets and improve the classification accuracy on datasets with insufficient training samples. The accuracy increased by approximately 20% compared with that of a model based only on the original small dataset. The results demonstrated that the proposed approach is a novel and effective method for CAD in hospitals with only small training datasets. It solved the challenge of limited sample size in detection of AD, which is a common issue but lack of adequate attention. Furthermore, this paper sheds new light on effective use of multi-source data for neurological disease diagnosis.

[1]  Daoqiang Zhang,et al.  Multi-modal multi-task learning for joint prediction of multiple regression and classification variables in Alzheimer's disease , 2012, NeuroImage.

[2]  Eric Westman,et al.  Combining MRI and CSF measures for classification of Alzheimer's disease and prediction of mild cognitive impairment conversion , 2012, NeuroImage.

[3]  M. Folstein,et al.  Clinical diagnosis of Alzheimer's disease , 1984, Neurology.

[4]  Dinggang Shen,et al.  Extraction of dynamic functional connectivity from brain grey matter and white matter for MCI classification , 2017, Human brain mapping.

[5]  Yong He,et al.  Spatial patterns of intrinsic brain activity in mild cognitive impairment and alzheimer's disease: A resting‐state functional MRI study , 2011, Human brain mapping.

[6]  Daoqiang Zhang,et al.  Integration of Network Topological and Connectivity Properties for Neuroimaging Classification , 2014, IEEE Transactions on Biomedical Engineering.

[7]  Daniel L. Rubin,et al.  Network Analysis of Intrinsic Functional Brain Connectivity in Alzheimer's Disease , 2008, PLoS Comput. Biol..

[8]  Tianzi Jiang,et al.  Regional coherence changes in the early stages of Alzheimer’s disease: A combined structural and resting-state functional MRI study , 2007, NeuroImage.

[9]  Harald Hampel,et al.  Diagnostic power of default mode network resting state fMRI in the detection of Alzheimer's disease , 2012, Neurobiology of Aging.

[10]  T. Goldberg,et al.  Psychosis in Alzheimer's disease is associated with frontal metabolic impairment and accelerated decline in working memory: findings from the Alzheimer's Disease Neuroimaging Initiative. , 2014, The American journal of geriatric psychiatry : official journal of the American Association for Geriatric Psychiatry.

[11]  Marie Chupin,et al.  Automatic classi fi cation of patients with Alzheimer ' s disease from structural MRI : A comparison of ten methods using the ADNI database , 2010 .

[12]  Nick C Fox,et al.  Presymptomatic hippocampal atrophy in Alzheimer's disease. A longitudinal MRI study. , 1996, Brain : a journal of neurology.

[13]  Daoqiang Zhang,et al.  Identification of MCI individuals using structural and functional connectivity networks , 2012, NeuroImage.

[14]  Georg Langs,et al.  Unsupervised Pre-training Across Image Domains Improves Lung Tissue Classification , 2014, MCV.

[15]  Klaus H. Maier-Hein,et al.  DALSA: Domain Adaptation for Supervised Learning From Sparsely Annotated MR Images , 2024, IEEE Transactions on Medical Imaging.

[16]  Katherine E. Prater,et al.  Functional connectivity tracks clinical deterioration in Alzheimer's disease , 2012, Neurobiology of Aging.

[17]  M. Walter,et al.  Multicenter stability of resting state fMRI in the detection of Alzheimer's disease and amnestic MCI , 2017, NeuroImage: Clinical.

[18]  S. H. Hojjati,et al.  Predicting conversion from MCI to AD using resting-state fMRI, graph theoretical approach and SVM , 2017, Journal of Neuroscience Methods.

[19]  Emily L. Dennis,et al.  Functional Brain Connectivity Using fMRI in Aging and Alzheimer’s Disease , 2014, Neuropsychology Review.

[20]  Tijn M. Schouten,et al.  Combining anatomical, diffusion, and resting state functional magnetic resonance imaging for individual classification of mild and moderate Alzheimer's disease , 2016, NeuroImage: Clinical.

[21]  K. Lovblad,et al.  Individual Classification of Mild Cognitive Impairment Subtypes by Support Vector Machine Analysis of White Matter DTI , 2013, American Journal of Neuroradiology.

[22]  Trevor Hastie,et al.  Regularized linear discriminant analysis and its application in microarrays. , 2007, Biostatistics.

[23]  Trevor Darrell,et al.  Adapting Visual Category Models to New Domains , 2010, ECCV.

[24]  N. Tzourio-Mazoyer,et al.  Automated Anatomical Labeling of Activations in SPM Using a Macroscopic Anatomical Parcellation of the MNI MRI Single-Subject Brain , 2002, NeuroImage.

[25]  K Herholz,et al.  Positron emission tomography imaging in dementia. , 2007, The British journal of radiology.

[26]  S. Rombouts,et al.  Loss of ‘Small-World’ Networks in Alzheimer's Disease: Graph Analysis of fMRI Resting-State Functional Connectivity , 2010, PloS one.

[27]  S. Teipel,et al.  Multimodal analysis of functional and structural disconnection in Alzheimer's disease using multiple kernel SVM , 2015, Human brain mapping.

[28]  Tinne Tuytelaars,et al.  Unsupervised Visual Domain Adaptation Using Subspace Alignment , 2013, 2013 IEEE International Conference on Computer Vision.

[29]  Huafu Chen,et al.  Multivariate classification of social anxiety disorder using whole brain functional connectivity , 2013, Brain Structure and Function.

[30]  Trevor Darrell,et al.  Efficient Learning of Domain-invariant Image Representations , 2013, ICLR.

[31]  Rama Chellappa,et al.  Generalized Domain-Adaptive Dictionaries , 2013, 2013 IEEE Conference on Computer Vision and Pattern Recognition.

[32]  Dinggang Shen,et al.  Estimating functional brain networks by incorporating a modularity prior , 2016, NeuroImage.

[33]  Rama Chellappa,et al.  Unsupervised Adaptation Across Domain Shifts by Generating Intermediate Data Representations , 2014, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[34]  Christian Wachinger,et al.  Domain adaptation for Alzheimer's disease diagnostics , 2016, NeuroImage.

[35]  Yufeng Zang,et al.  DPARSF: A MATLAB Toolbox for “Pipeline” Data Analysis of Resting-State fMRI , 2010 .

[36]  M. Prince,et al.  World Alzheimer Report 2015 - The Global Impact of Dementia: An analysis of prevalence, incidence, cost and trends , 2015 .

[37]  Gang Li,et al.  Topographical Information-Based High-Order Functional Connectivity and Its Application in Abnormality Detection for Mild Cognitive Impairment. , 2016, Journal of Alzheimer's disease : JAD.

[38]  Stefan Klöppel,et al.  Combining DTI and MRI for the Automated Detection of Alzheimer's Disease Using a Large European Multicenter Dataset , 2012, MBIA.

[39]  A. Besga,et al.  Computer Aided Diagnosis system for Alzheimer Disease using brain Diffusion Tensor Imaging features selected by Pearson's correlation , 2011, Neuroscience Letters.

[40]  Yufeng Zang,et al.  Standardizing the intrinsic brain: Towards robust measurement of inter-individual variation in 1000 functional connectomes , 2013, NeuroImage.

[41]  Yong He,et al.  BrainNet Viewer: A Network Visualization Tool for Human Brain Connectomics , 2013, PloS one.

[42]  Xi-Nian Zuo,et al.  REST: A Toolkit for Resting-State Functional Magnetic Resonance Imaging Data Processing , 2011, PloS one.

[43]  C. DeCarli,et al.  FDG-PET improves accuracy in distinguishing frontotemporal dementia and Alzheimer's disease. , 2007, Brain : a journal of neurology.

[44]  Rama Chellappa,et al.  Visual Domain Adaptation: A survey of recent advances , 2015, IEEE Signal Processing Magazine.

[45]  R. Sperling,et al.  Longitudinal fMRI in elderly reveals loss of hippocampal activation with clinical decline , 2010, Neurology.

[46]  Rubén Armañanzas,et al.  Voxel-Based Diagnosis of Alzheimer's Disease Using Classifier Ensembles , 2017, IEEE Journal of Biomedical and Health Informatics.

[47]  Rama Chellappa,et al.  Domain adaptation for object recognition: An unsupervised approach , 2011, 2011 International Conference on Computer Vision.

[48]  Juan Manuel Górriz,et al.  Early diagnosis of Alzheimer's disease based on partial least squares, principal component analysis and support vector machine using segmented MRI images , 2015, Neurocomputing.

[49]  Shantanu H. Joshi,et al.  Diffusion weighted imaging-based maximum density path analysis and classification of Alzheimer's disease , 2015, Neurobiology of Aging.

[50]  Marleen de Bruijne,et al.  Transfer Learning Improves Supervised Image Segmentation Across Imaging Protocols , 2015, IEEE Trans. Medical Imaging.

[51]  Peter Mountney,et al.  Learning without Labeling: Domain Adaptation for Ultrasound Transducer Localization , 2013, MICCAI.

[52]  Byungkyu Brian Park,et al.  Classification of diffusion tensor images for the early detection of Alzheimer's disease , 2013, Comput. Biol. Medicine.

[53]  M. Kendall A NEW MEASURE OF RANK CORRELATION , 1938 .

[54]  Daoqiang Zhang,et al.  Multimodal classification of Alzheimer's disease and mild cognitive impairment , 2011, NeuroImage.

[55]  Tijn M. Schouten,et al.  Combining multiple anatomical MRI measures improves Alzheimer's disease classification , 2016, Human brain mapping.

[56]  Dong Liu,et al.  Robust visual domain adaptation with low-rank reconstruction , 2012, 2012 IEEE Conference on Computer Vision and Pattern Recognition.

[57]  Geoffrey E. Hinton,et al.  Visualizing Data using t-SNE , 2008 .

[58]  Yong Liu,et al.  Disrupted Small-World Brain Networks in Moderate Alzheimer's Disease: A Resting-State fMRI Study , 2012, PloS one.

[59]  Francisco Jesús Martínez-Murcia,et al.  LVQ-SVM based CAD tool applied to structural MRI for the diagnosis of the Alzheimer's disease , 2013, Pattern Recognit. Lett..

[60]  Rama Chellappa,et al.  DASH-N: Joint Hierarchical Domain Adaptation and Feature Learning , 2015, IEEE Transactions on Image Processing.

[61]  Nassir Navab,et al.  Supervised domain adaptation of decision forests: Transfer of models trained in vitro for in vivo intravascular ultrasound tissue characterization , 2016, Medical Image Anal..