Investigations of barley stripe mosaic virus as a gene silencing vector in barley roots and in Brachypodium distachyon and oat

[1]  Chittaranjan Kole,et al.  Cereals and Millets , 2010 .

[2]  Sai Guna Ranjan Gurazada,et al.  Genome sequencing and analysis of the model grass Brachypodium distachyon , 2010, Nature.

[3]  C. Lacomme,et al.  The brome mosaic virus-based recombination vector triggers a limited gene silencing response depending on the orientation of the inserted sequence , 2010, Archives of Virology.

[4]  Daowen Wang,et al.  Establishment of an effective virus induced gene silencing system with BSMV in Haynaldia villosa , 2010, Molecular Biology Reports.

[5]  A. O. Jackson,et al.  Hordeivirus replication, movement, and pathogenesis. , 2009, Annual review of phytopathology.

[6]  M. Bevan,et al.  A protocol for Agrobacterium-mediated transformation of Brachypodium distachyon community standard line Bd21 , 2009, Nature Protocols.

[7]  Peter Wenzl,et al.  New DArT markers for oat provide enhanced map coverage and global germplasm characterization , 2009, BMC Genomics.

[8]  S. Whitham,et al.  Development and use of an efficient DNA-based viral gene silencing vector for soybean. , 2009, Molecular plant-microbe interactions : MPMI.

[9]  R. S. Nelson,et al.  Resources for Virus-Induced Gene Silencing in the Grasses1 , 2009, Plant Physiology.

[10]  S. Liebhaber,et al.  Effects of local mRNA structure on posttranscriptional gene silencing , 2008, Proceedings of the National Academy of Sciences.

[11]  A. Nadolska-Orczyk,et al.  Agrobacterium-mediated transformation of oat (Avena sativa L.) cultivars via immature embryo and leaf explants , 2008, Plant Cell Reports.

[12]  S. P. Walton,et al.  Impact of target mRNA structure on siRNA silencing efficiency: A large‐scale study , 2008, Biotechnology and bioengineering.

[13]  J. Stougaard,et al.  Virus-induced gene silencing (VIGS) as a reverse genetic tool to study development of symbiotic root nodules. , 2008, Molecular plant-microbe interactions : MPMI.

[14]  S. Zheng,et al.  Use of the modified viral satellite DNA vector to silence mineral nutrition-related genes in plants: silencing of the tomato ferric chelate reductase gene, FRO1, as an example , 2008, Science in China Series C: Life Sciences.

[15]  I. Cooper,et al.  Evidence for GC preference by monocot Dicer-like proteins. , 2008, Biochemical and biophysical research communications.

[16]  W. Scheible,et al.  MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis , 2008, The Plant journal : for cell and molecular biology.

[17]  J. Vogel,et al.  High-efficiency Agrobacterium-mediated transformation of Brachypodium distachyon inbred line Bd21-3 , 2008, Plant Cell Reports.

[18]  S. Dinesh-Kumar,et al.  A Ligation-Independent Cloning Tobacco Rattle Virus Vector for High-Throughput Virus-Induced Gene Silencing Identifies Roles for NbMADS4-1 and -2 in Floral Development1[W][OA] , 2007, Plant Physiology.

[19]  M. Bruun-Rasmussen,et al.  Stability of Barley stripe mosaic virus-induced gene silencing in barley. , 2007, Molecular plant-microbe interactions : MPMI.

[20]  M. Todesco,et al.  Target mimicry provides a new mechanism for regulation of microRNA activity , 2007, Nature Genetics.

[21]  Tamas Dalmay,et al.  Evidence for targeting common siRNA hotspots and GC preference by plant Dicer‐like proteins , 2007, FEBS letters.

[22]  M. Pezzotti,et al.  Stability of Potato virus X expression vectors is related to insert size: implications for replication models and risk assessment , 2007, Transgenic Research.

[23]  R. S. Nelson,et al.  Characterization of a Brome mosaic virus strain and its use as a vector for gene silencing in monocotyledonous hosts. , 2006, Molecular plant-microbe interactions : MPMI.

[24]  Winfried S Peters,et al.  Tailor-made composite functions as tools in model choice: the case of sigmoidal vs bi-linear growth profiles , 2006, Plant Methods.

[25]  M. Stitt,et al.  PHO2, MicroRNA399, and PHR1 Define a Phosphate-Signaling Pathway in Plants1[W][OA] , 2006, Plant Physiology.

[26]  Chun-Lin Su,et al.  pho2, a Phosphate Overaccumulator, Is Caused by a Nonsense Mutation in a MicroRNA399 Target Gene1[W] , 2006, Plant Physiology.

[27]  M. C. Edwards,et al.  Virus vector for gene silencing in wheat. , 2005, BioTechniques.

[28]  B. Gill,et al.  Development of a Virus-Induced Gene-Silencing System for Hexaploid Wheat and Its Use in Functional Analysis of the Lr21-Mediated Leaf Rust Resistance Pathway1 , 2005, Plant Physiology.

[29]  Javier F. Palatnik,et al.  Specific effects of microRNAs on the plant transcriptome. , 2005, Developmental cell.

[30]  M. Folling,et al.  A rapid and efficient transformation protocol for the grass Brachypodium distachyon , 2005, Plant Cell Reports.

[31]  E. Delhaize,et al.  Promoter Analysis of the Barley Pht1;1 Phosphate Transporter Gene Identifies Regions Controlling Root Expression and Responsiveness to Phosphate Deprivation1[w] , 2004, Plant Physiology.

[32]  K. Oparka,et al.  Efficient Virus-Induced Gene Silencing in Roots Using a Modified Tobacco Rattle Virus Vector1[w] , 2004, Plant Physiology.

[33]  O. Lund,et al.  Virus-induced gene silencing as a tool for functional genomics in a legume species. , 2004, The Plant journal : for cell and molecular biology.

[34]  T. Nielsen,et al.  Gene expression during recovery from phosphate starvation in roots and shoots of Arabidopsis thaliana , 2004 .

[35]  G. Martin,et al.  Applications and advantages of virus-induced gene silencing for gene function studies in plants. , 2004, The Plant journal : for cell and molecular biology.

[36]  E. Delhaize,et al.  Characterization of promoter expression patterns derived from the Pht1 phosphate transporter genes of barley (Hordeum vulgare L.). , 2004, Journal of experimental botany.

[37]  C. Lacomme,et al.  Enhancement of virus-induced gene silencing through viral-based production of inverted-repeats. , 2003, The Plant journal : for cell and molecular biology.

[38]  M. Mølhøj,et al.  Towards understanding the role of membrane-bound endo-beta-1,4-glucanases in cellulose biosynthesis. , 2002, Plant & cell physiology.

[39]  S. Holzberg,et al.  Barley stripe mosaic virus-induced gene silencing in a monocot plant. , 2002, The Plant journal : for cell and molecular biology.

[40]  J. Draper,et al.  Brachypodium distachyon. A new model system for functional genomics in grasses. , 2001, Plant physiology.

[41]  A. Osbourn,et al.  A new class of oxidosqualene cyclases directs synthesis of antimicrobial phytoprotectants in monocots , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[42]  D. Baulcombe,et al.  Size constraints for targeting post-transcriptional gene silencing and for RNA-directed methylation in Nicotiana benthamiana using a potato virus X vector. , 2001, The Plant journal : for cell and molecular biology.

[43]  V. Rubio,et al.  Influence of cytokinins on the expression of phosphate starvation responsive genes in Arabidopsis. , 2000, The Plant journal : for cell and molecular biology.

[44]  D. Somers,et al.  Association of transgene integration sites with chromosome rearrangements in hexaploid oat , 2000, Theoretical and Applied Genetics.

[45]  D. Prasher,et al.  Removal of a cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[46]  M. Kumagai,et al.  Cytoplasmic inhibition of carotenoid biosynthesis with virus-derived RNA. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[47]  M. C. Edwards,et al.  Evidence that the alpha a gene of barley stripe mosaic virus encodes determinants of pathogenicity to oat (Avena sativa). , 1994, Virology.

[48]  W. Dawson,et al.  Systemic expression of a bacterial gene by a tobacco mosaic virus-based vector. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[49]  P. D. de Jong,et al.  Ligation-independent cloning of PCR products (LIC-PCR). , 1990, Nucleic acids research.

[50]  I. Petty,et al.  Infectious barley stripe mosaic virus RNA transcribed in vitro from full-length genomic cDNA clones. , 1989, Virology.

[51]  P. A. Lanzetta,et al.  An improved assay for nanomole amounts of inorganic phosphate. , 1979, Analytical biochemistry.

[52]  A. N. Adams,et al.  Characteristics of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses. , 1977, The Journal of general virology.

[53]  X. Belles.  Beyond Drosophila: RNAi in vivo and functional genomics in insects. , 2010, Annual review of entomology.

[54]  Barbara A Halkier,et al.  USER cloning and USER fusion: the ideal cloning techniques for small and big laboratories. , 2010, Methods in molecular biology.

[55]  M. Akkaya,et al.  Virus induced gene silencing in Brachypodium distachyon, a model organism for cereals , 2009, Plant Cell, Tissue and Organ Culture (PCTOC).

[56]  S. Reynolds,et al.  RNAI AND THE INSECT IMMUNE SYSTEM , 2008 .

[57]  Leemor Joshua-Tor,et al.  Strategies for protein coexpression in Escherichia coli , 2006, Nature Methods.

[58]  V. Blok,et al.  Efficient viral-induced gene silencing in roots using a modified tobacco rattle virus , 2005 .

[59]  M. C. Edwards,et al.  A single nucleotide substitution in the alpha a gene confers oat pathogenicity to barley stripe mosaic virus strain ND18. , 1996, Molecular plant-microbe interactions : MPMI.

[60]  Weiland Jj,et al.  A single nucleotide substitution in the alpha a gene confers oat pathogenicity to barley stripe mosaic virus strain ND18. , 1996 .

[61]  O. Gamborg,et al.  Plant Cell, Tissue and Organ Culture , 1995, Springer Lab Manual.

[62]  B. Olsson,et al.  Bmc Plant Biology Generation and Analysis of 9792 Est Sequences from Cold Acclimated Oat, Avena Sativa , 2022 .