Trends in biomedical informatics: most cited topics from recent years

Biomedical informatics is a young, highly interdisciplinary field that is evolving quickly. It is important to know which published topics in generalist biomedical informatics journals elicit the most interest from the scientific community, and whether this interest changes over time, so that journals can better serve their readers. It is also important to understand whether free access to biomedical informatics articles impacts their citation rates in a significant way, so authors can make informed decisions about unlock fees, and journal owners and publishers understand the implications of open access. The topics and JAMIA articles from years 2009 and 2010 that have been most cited according to the Web of Science are described. To better understand the effects of free access in article dissemination, the number of citations per month after publication for articles published in 2009 versus 2010 was compared, since there was a significant change in free access to JAMIA articles between those years. Results suggest that there is a positive association between free access and citation rate for JAMIA articles.

[1]  Sunghwan Sohn,et al.  Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications , 2010, J. Am. Medical Informatics Assoc..

[2]  Steven R. Simon,et al.  Case Report: Community-wide Implementation of Health Information Technology: The Massachusetts eHealth Collaborative Experience , 2009, J. Am. Medical Informatics Assoc..

[3]  Linda Gavendo,et al.  Computerized clinical decision support during medication ordering for long-term care residents with renal insufficiency. , 2009, Journal of the American Medical Informatics Association : JAMIA.

[4]  Gretchen Vogel Scientific publishing. Open access gains support; fees and journal quality deter submissions. , 2011, Science.

[5]  Kai Zheng,et al.  Research Article: An Interface-driven Analysis of User Interactions with an Electronic Health Records System , 2009, J. Am. Medical Informatics Assoc..

[6]  K. Antelman Do Open-Access Articles Have a Greater Research Impact? , 2004 .

[7]  Michaël,et al.  Seeking health information online: does Wikipedia matter? , 2009, Journal of the American Medical Informatics Association : JAMIA.

[8]  Philip M. Davis,et al.  Open access, readership, citations: a randomized controlled trial of scientific journal publishing , 2011, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[9]  Christopher G. Chute,et al.  Implementation Brief: LexGrid: A Framework for Representing, Storing, and Querying Biomedical Terminologies from Simple to Sublime , 2009, J. Am. Medical Informatics Assoc..

[10]  Randolph A. Miller,et al.  Research Paper: Evaluation of a Method to Identify and Categorize Section Headers in Clinical Documents , 2009, J. Am. Medical Informatics Assoc..

[11]  Gero Strauß,et al.  Research Paper: Validation of Knowledge Acquisition for Surgical Process Models , 2009, J. Am. Medical Informatics Assoc..

[12]  Özlem Uzuner,et al.  Machine learning and rule-based approaches to assertion classification. , 2009, Journal of the American Medical Informatics Association : JAMIA.

[13]  Emily S. Patterson,et al.  Evaluation of a physician informatics tool to improve patient handoffs. , 2009, Journal of the American Medical Informatics Association : JAMIA.

[14]  Joshua C. Denny,et al.  The disclosure of diagnosis codes can breach research participants' privacy , 2010, J. Am. Medical Informatics Assoc..

[15]  Steven R. Simon,et al.  Research Paper: Physicians' Use of Key Functions in Electronic Health Records from 2005 to 2007: A Statewide Survey , 2009, J. Am. Medical Informatics Assoc..

[16]  P. Seglen,et al.  Education and debate , 1999, The Ethics of Public Health.

[17]  Jin Fan,et al.  Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease , 2010, J. Am. Medical Informatics Assoc..

[18]  Vincent Larivière,et al.  Self-Selected or Mandated, Open Access Increases Citation Impact for Higher Quality Research , 2010, PloS one.

[19]  James J. Cimino,et al.  Research Paper: A Randomized Trial Comparing Telemedicine Case Management with Usual Care in Older, Ethnically Diverse, Medically Underserved Patients with Diabetes Mellitus: 5 Year Results of the IDEATel Study , 2009, J. Am. Medical Informatics Assoc..

[20]  Bradley Malin,et al.  Evaluating re-identification risks with respect to the HIPAA privacy rule , 2010, J. Am. Medical Informatics Assoc..

[21]  Min Li,et al.  High accuracy information extraction of medication information from clinical notes: 2009 i2b2 medication extraction challenge , 2010, J. Am. Medical Informatics Assoc..

[22]  S. D. Foss,et al.  266 Note: A Method for Obtaining Initial Estimates of the Parameters in Exponential Curve Fitting , 1969 .

[23]  Thomas H. Payne,et al.  Transition from Paper to Electronic Inpatient Physician Notes Case Description , 2022 .

[24]  Alan R. Aronson,et al.  An overview of MetaMap: historical perspective and recent advances , 2010, J. Am. Medical Informatics Assoc..

[25]  Kim M. Unertl,et al.  Research Paper: Describing and Modeling Workflow and Information Flow in Chronic Disease Care , 2009, J. Am. Medical Informatics Assoc..

[26]  Eric W. Ford,et al.  Resistance is futile: but it is slowing the pace of EHR adoption nonetheless. , 2009, Journal of the American Medical Informatics Association : JAMIA.

[27]  Thomas Jaki,et al.  Non-compartmental estimation of pharmacokinetic parameters in serial sampling designs , 2009, Journal of Pharmacokinetics and Pharmacodynamics.

[28]  R. Lazarus,et al.  Viewpoint Paper: Electronic Support for Public Health: Validated Case Finding and Reporting for Notifiable Diseases Using Electronic Medical Data , 2009, J. Am. Medical Informatics Assoc..

[29]  Joshua R. Vest,et al.  Health information exchange: persistent challenges and new strategies , 2010, J. Am. Medical Informatics Assoc..

[30]  James A. Evans,et al.  Open Access and Global Participation in Science , 2009, Science.

[31]  Matthew E Falagas,et al.  Comparison of PubMed, Scopus, Web of Science, and Google Scholar: strengths and weaknesses , 2007, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[32]  Zhiyong Lu,et al.  Evaluating Relevance Ranking Strategies for MEDLINE Retrieval , 2008, AMIA.

[33]  Steven R. Simon,et al.  Physician attitudes toward health information exchange: results of a statewide survey. , 2010, Journal of the American Medical Informatics Association : JAMIA.

[34]  Sergey Gavrilov,et al.  Application of Information Technology: Clinical Case Registries: Simultaneous Local and National Disease Registries for Population Quality Management , 2009, J. Am. Medical Informatics Assoc..

[35]  Charles Oppenheim,et al.  The citation advantage of open-access articles , 2008, J. Assoc. Inf. Sci. Technol..

[36]  Julia Adler-Milstein,et al.  Research paper: Characteristics associated with Regional Health Information Organization viability , 2010, J. Am. Medical Informatics Assoc..

[37]  Khaled El Emam,et al.  Model Formulation: Evaluating Predictors of Geographic Area Population Size Cut-offs to Manage Re-identification Risk , 2009, J. Am. Medical Informatics Assoc..

[38]  Stan Matwin,et al.  A new algorithm for reducing the workload of experts in performing systematic reviews , 2010, J. Am. Medical Informatics Assoc..

[39]  Clark C. Evans,et al.  Using global unique identifiers to link autism collections , 2010, J. Am. Medical Informatics Assoc..

[40]  Diane L. Seger,et al.  Viewpoint Paper: Tiering Drug-Drug Interaction Alerts by Severity Increases Compliance Rates , 2009, J. Am. Medical Informatics Assoc..

[41]  Alexander Turchin,et al.  Comparison of information content of structured and narrative text data sources on the example of medication intensification. , 2009, Journal of the American Medical Informatics Association : JAMIA.

[42]  Son Doan,et al.  Application of information technology: MedEx: a medication information extraction system for clinical narratives , 2010, J. Am. Medical Informatics Assoc..

[43]  B. New,et al.  The Case Against , 2018, Journal of Pharmacy Practice and Research.

[44]  P. Jacsó As we may search : Comparison of major features of the Web of Science, Scopus, and Google Scholar citation-based and citation-enhanced databases , 2005 .

[45]  Lokman I. Meho,et al.  Impact of data sources on citation counts and rankings of LIS faculty: Web of science versus scopus and google scholar , 2007, J. Assoc. Inf. Sci. Technol..

[46]  S. Trent Rosenbloom,et al.  Research Paper: Using SNOMED CT to Represent Two Interface Terminologies , 2009, J. Am. Medical Informatics Assoc..

[47]  Hong Yu,et al.  Lancet: a high precision medication event extraction system for clinical text , 2010, J. Am. Medical Informatics Assoc..

[48]  Serguei V. S. Pakhomov,et al.  Evaluation of family history information within clinical documents and adequacy of HL7 clinical statement and clinical genomics family history models for its representation: a case report , 2010, J. Am. Medical Informatics Assoc..

[49]  Goran Nenadic,et al.  Medication information extraction with linguistic pattern matching and semantic rules , 2010, J. Am. Medical Informatics Assoc..

[50]  Halil Kilicoglu,et al.  Viewpoint Paper: Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence , 2009, J. Am. Medical Informatics Assoc..

[51]  Leonard W. D'Avolio,et al.  Evaluation of a generalizable approach to clinical information retrieval using the automated retrieval console (ARC) , 2010, J. Am. Medical Informatics Assoc..

[52]  Jean-Pierre Corriveau,et al.  A globally optimal k-anonymity method for the de-identification of health data. , 2009, Journal of the American Medical Informatics Association : JAMIA.

[53]  Steven R. Simon,et al.  The relationship between electronic health record use and quality of care over time. , 2009, Journal of the American Medical Informatics Association : JAMIA.

[54]  Donald W. Simborg,et al.  Consumer empowerment versus consumer populism in healthcare IT , 2010, J. Am. Medical Informatics Assoc..

[55]  Xiaoyan Wang,et al.  Active computerized pharmacovigilance using natural language processing, statistics, and electronic health records: a feasibility study. , 2009, Journal of the American Medical Informatics Association : JAMIA.

[56]  Philip M Davis Open access: increased citations not guaranteed. , 2009, Science.

[57]  William M. Tierney,et al.  Evaluating a scalable model for implementing electronic health records in resource-limited settings , 2010, J. Am. Medical Informatics Assoc..

[58]  Douglas MacFadden,et al.  Application of Information Technology The Shared Health Research Information Network ( SHRINE ) : A Prototype Federated Query Tool for Clinical Data Repositories , 2014 .