Asymmetric allosteric activation of the symmetric ArgR hexamer.

Hexameric arginine repressor, ArgR, bound to L-arginine serves both as the master transcriptional repressor/activator at diverse regulons in a wide range of bacteria and as a required cofactor for resolution of ColE1 plasmid multimers. Multifunctional ArgR is thus unusual in possessing features of specific gene regulators, global regulators, and non-specific gene organizers; its closest functional analog is probably CAP, the cyclic AMP receptor/activator protein. Isothermal titration calorimetry, surface plasmon resonance, and proteolysis indicate that binding of a single L-argine [corrected] per ArgR hexamer triggers a global conformation [corrected] change and resets the affinities of the remaining five sites, making them 100-fold weaker. The analysis suggests a novel thermodynamic signature for this mechanism of activation.

[1]  D. Lim,et al.  Explanation for different types of regulation of arginine biosynthesis in Escherichia coli B and Escherichia coli K12 caused by a difference between their arginine repressors. , 1994, Journal of molecular biology.

[2]  Catherine L. Lawson,et al.  The three-dimensional structure of trp repressor , 1985, Nature.

[3]  R. Gunsalus,et al.  Interaction of the Escherichia coli trp aporepressor with its ligand, L-tryptophan. , 1986, The Journal of biological chemistry.

[4]  A. Abdelal,et al.  Role of ArgR in Activation of the ast Operon, Encoding Enzymes of the Arginine Succinyltransferase Pathway in Salmonella typhimurium , 1999, Journal of bacteriology.

[5]  I. M. Klotz Ligand-Receptor Energetics: A Guide for the Perplexed , 1997 .

[6]  I. Pastan,et al.  Cyclic adenosine monophosphate receptor: loss of cAMP-dependent DNA binding activity after proteolysis in the presence of cyclic adenosine monophosphate. , 1973, Proceedings of the National Academy of Sciences of the United States of America.

[7]  N. Glansdorff,et al.  Structure of the arginine repressor from Bacillus stearothermophilus , 1999, Nature Structural Biology.

[8]  J. Lee,et al.  Escherichia coli cAMP receptor protein: evidence for three protein conformational states with different promoter binding affinities. , 1989, Biochemistry.

[9]  M. Takahashi,et al.  An equilibrium study of the cooperative binding of adenosine cyclic 3',5'-monophosphate and guanosine cyclic 3',5'-monophosphate to the adenosine cyclic 3',5'-monophosphate receptor protein from Escherichia coli. , 1980, Biochemistry.

[10]  U. K. Laemmli,et al.  Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 , 1970, Nature.

[11]  G. V. Van Duyne,et al.  A superrepressor mutant of the arginine repressor with a correctly predicted alteration of ligand binding specificity. , 1998, Journal of molecular biology.

[12]  M. Record,et al.  Specific and non-specific interactions of integration host factor with DNA: thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding. , 2001, Journal of molecular biology.

[13]  D. Lim,et al.  Nucleotide sequence of the argR gene of Escherichia coli K-12 and isolation of its product, the arginine repressor. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[14]  P. Sigler,et al.  Structure of the oligomerization and L-arginine binding domain of the arginine repressor of Escherichia coli. , 1996, Journal of molecular biology.

[15]  D. Gigot,et al.  Purine and pyrimidine-specific repression of the Escherichia coli carAB operon are functionally and structurally coupled. , 2004, Journal of molecular biology.

[16]  H. Won,et al.  Stoichiometry and Structural Effect of the Cyclic Nucleotide Binding to Cyclic AMP Receptor Protein* , 2002, The Journal of Biological Chemistry.

[17]  A. Mason,et al.  Calorimetric studies of the binding of ferric ions to ovotransferrin and interactions between binding sites. , 1991, Biochemistry.

[18]  W Bruce Turnbull,et al.  On the value of c: can low affinity systems be studied by isothermal titration calorimetry? , 2003, Journal of the American Chemical Society.

[19]  D G Myszka,et al.  Global analysis of a macromolecular interaction measured on BIAcore. , 1996, Biochemical and biophysical research communications.

[20]  R. Ebright,et al.  Transcription activation by catabolite activator protein (CAP). , 1999, Journal of molecular biology.

[21]  S Baumberg,et al.  Dissecting the molecular details of prokaryotic transcriptional control by surface plasmon resonance: the methionine and arginine repressor proteins. , 1998, Biosensors & bioelectronics.

[22]  D. Sherratt,et al.  X‐ray structure of aminopeptidase A from Escherichia coli and a model for the nucleoprotein complex in Xer site‐specific recombination , 1999, The EMBO journal.

[23]  K. Makarova,et al.  Conservation of the binding site for the arginine repressor in all bacterial lineages , 2001, Genome Biology.

[24]  J Yang,et al.  Thermodynamics of ligand binding to trp repressor. , 1993, Biochemistry.

[25]  F. Schmidtchen The anatomy of the energetics of molecular recognition by calorimetry: chiral discrimination of camphor by alpha-cyclodextrin. , 2002, Chemistry.

[26]  D. Myszka,et al.  Improving biosensor analysis , 1999, Journal of molecular recognition : JMR.

[27]  O. Kuipers,et al.  ArgR and AhrC Are Both Required for Regulation of Arginine Metabolism in Lactococcus lactis , 2004, Journal of bacteriology.

[28]  J. Carey A systematic and general proteolytic method for defining structural and functional domains of proteins. , 2000, Methods in enzymology.

[29]  R. Fairman,et al.  Quantitative analysis of DNA binding by the Escherichia coli arginine repressor. , 2001, Journal of molecular biology.

[30]  J F Brandts,et al.  Rapid measurement of binding constants and heats of binding using a new titration calorimeter. , 1989, Analytical biochemistry.

[31]  A. Mason,et al.  Calorimetric studies of the binding of ferric ions to human serum transferrin. , 1993, Biochemistry.

[32]  T. Steitz,et al.  The structure of a CAP-DNA complex having two cAMP molecules bound to each monomer. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[33]  R. Fairman,et al.  The DNA-binding domain of the hexameric arginine repressor. , 1995, Journal of molecular biology.

[34]  L. Reitzer,et al.  ArgR-Independent Induction and ArgR-Dependent Superinduction of the astCADBE Operon in Escherichia coli , 2002, Journal of bacteriology.

[35]  M. Nilges,et al.  Solution structure of the DNA-binding domain and model for the complex of multifunctiona hexameric arginine represser with DNA , 1997, Nature Structural Biology.

[36]  J G Harman,et al.  Allosteric regulation of the cAMP receptor protein. , 2001, Biochimica et biophysica acta.

[37]  F. Schwarz,et al.  Thermodynamics of Cyclic Nucleotide Binding to the cAMP Receptor Protein and Its T127L Mutant (*) , 1995, The Journal of Biological Chemistry.

[38]  D Szwajkajzer,et al.  Molecular and biological constraints on ligand-binding affinity and specificity. , 1997, Biopolymers.