Tensegrity representation of microtubule objects using unified particle objects and springs

[1]  Georgios Iakovou,et al.  Adaptive GPU-accelerated force calculation for interactive rigid molecular docking using haptics. , 2015, Journal of molecular graphics & modelling.

[2]  Frank Weichert,et al.  Analysis of the Accuracy and Robustness of the Leap Motion Controller , 2013, Sensors.

[3]  Kurosh Darvish,et al.  Characterization of the viscoelastic behavior of a simplified collagen micro-fibril based on molecular dynamics simulations. , 2016, Journal of the mechanical behavior of biomedical materials.

[4]  Akihiko Konagaya,et al.  A high-performance haptic rendering system for virtual reality molecular modeling , 2019, Artificial Life and Robotics.

[5]  Akihiko Konagaya,et al.  Real-time 3D microtubule gliding simulation accelerated by GPU computing , 2016, Int. J. Autom. Comput..

[6]  K. Porter,et al.  A "MICROTUBULE" IN PLANT CELL FINE STRUCTURE , 1963, The Journal of cell biology.

[7]  T. Mitchison,et al.  Microtubule polymerization dynamics. , 1997, Annual review of cell and developmental biology.

[8]  Matthew B. Stocks,et al.  Interacting with the biomolecular solvent accessible surface via a haptic feedback device , 2009, BMC Structural Biology.

[9]  Sander Oude Elberink,et al.  Accuracy and Resolution of Kinect Depth Data for Indoor Mapping Applications , 2012, Sensors.

[10]  Donald E Ingber,et al.  Mechanical properties of individual focal adhesions probed with a magnetic microneedle. , 2004, Biochemical and biophysical research communications.

[11]  Akihiko Konagaya,et al.  Parallel Interaction Detection Algorithms for a Particle-based Live Controlled Real-time Microtubule Gliding Simulation System Accelerated by GPGPU , 2017, New Generation Computing.

[12]  Hideo Tashiro,et al.  Flexural rigidity of individual microtubules measured by a buckling force with optical traps. , 2006, Biophysical journal.

[13]  Denis Fourches,et al.  RealityConvert: a tool for preparing 3D models of biochemical structures for augmented and virtual reality , 2017, Bioinform..

[14]  Jonas Boström,et al.  3D-Lab: a collaborative web-based platform for molecular modeling. , 2016, Future medicinal chemistry.

[15]  Stephen D. Laycock,et al.  Applying forces to elastic network models of large biomolecules using a haptic feedback device , 2011, J. Comput. Aided Mol. Des..

[16]  Kurosh Darvish,et al.  Investigation of mechanisms of viscoelastic behavior of collagen molecule. , 2015, Journal of the mechanical behavior of biomedical materials.

[17]  Akihiko Konagaya,et al.  Artificial Smooth Muscle Model Composed of Hierarchically Ordered Microtubule Asters Mediated by DNA Origami Nanostructures. , 2019, Nano letters.

[18]  D. Ingber.  Tensegrity I. Cell structure and hierarchical systems biology , 2003, Journal of Cell Science.

[19]  Akihiko Konagaya,et al.  Using a master and slave approach for GPGPU computing to achieve optimal scaling in a 3D real-time simulation , 2016, 2016 IEEE 11th Annual International Conference on Nano/Micro Engineered and Molecular Systems (NEMS).

[20]  Zeljka Mihajlovic,et al.  Rigid Body Joints in Real-Time Unified Particle Physics , 2018, Eurographics.

[21]  Christoph F Schmidt,et al.  Leveraging single protein polymers to measure flexural rigidity. , 2009, The journal of physical chemistry. B.

[22]  Jonas Boström,et al.  Molecular Rift: Virtual Reality for Drug Designers , 2015, J. Chem. Inf. Model..

[23]  Joze Guna,et al.  An Analysis of the Precision and Reliability of the Leap Motion Sensor and Its Suitability for Static and Dynamic Tracking , 2014, Sensors.

[24]  Randel L. Swanson,et al.  Biotensegrity: A Unifying Theory of Biological Architecture With Applications to Osteopathic Practice, Education, and Research—A Review and Analysis , 2013, The Journal of the American Osteopathic Association.

[25]  Olga Sourina,et al.  Six Degree-of-Freedom Haptic Rendering for Biomolecular Docking , 2011, Trans. Comput. Sci..

[26]  H Tashiro,et al.  Buckling of a single microtubule by optical trapping forces: direct measurement of microtubule rigidity. , 1995, Cell motility and the cytoskeleton.

[27]  Alain Micaelli,et al.  6 DOF haptic feedback for molecular docking using wave variables , 2007, Proceedings 2007 IEEE International Conference on Robotics and Automation.

[28]  Georgios Iakovou,et al.  Determination of locked interfaces in biomolecular complexes using Haptimol_RD , 2016, Biophysics and physicobiology.

[29]  Matthew Mirigian,et al.  Mechanics of microtubules. , 2010, Journal of biomechanics.

[30]  Akihiko Konagaya,et al.  Adaptation of Patterns of Motile Filaments under Dynamic Boundary Conditions. , 2019, ACS nano.

[31]  Mehdi Ammi,et al.  Multisensory VR interaction for protein-docking in the CoRSAIRe project , 2009, Virtual Reality.

[32]  Georgios Iakovou,et al.  Virtual Environment for Studying the Docking Interactions of Rigid Biomolecules with Haptics , 2017, J. Chem. Inf. Model..

[33]  M. Chalfie,et al.  Organization of neuronal microtubules in the nematode Caenorhabditis elegans , 1979, The Journal of cell biology.

[34]  Georgios Iakovou,et al.  A real-time proximity querying algorithm for haptic-based molecular docking. , 2014, Faraday discussions.

[35]  Andrew R. Lilja,et al.  Journey to the centre of the cell: Virtual reality immersion into scientific data , 2018, Traffic.

[36]  Tae-Yong Kim,et al.  Unified particle physics for real-time applications , 2014, ACM Trans. Graph..

[37]  Stephen D. Laycock,et al.  Navigation and exploration of large data-sets using a haptic feedback device , 2010, SIGGRAPH '10.

[38]  M. Schliwa,et al.  Flexural rigidity of microtubules measured with the use of optical tweezers. , 1996, Journal of cell science.