Darned in 2013: inclusion of model organisms and linking with Wikipedia
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Pavel V. Baranov | Anmol M. Kiran | John J. O'Mahony | Komal Sanjeev | P. Baranov | A. Kiran | J. J. O'Mahony | K. Sanjeev
[1] Z W Gu,et al. Apolipoprotein B-48 is the product of a messenger RNA with an organ-specific in-frame stop codon. , 1987, Science.
[2] R. Pease,et al. A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine , 1987, Cell.
[3] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[4] E M Southern,et al. Studies on the base pairing properties of deoxyinosine by solid phase hybridisation to oligonucleotides. , 1994, Nucleic acids research.
[5] T. Dawson,et al. Regulation of alternative splicing by RNA editing , 1999, Nature.
[6] M. O’Connell,et al. The many roles of an RNA editor , 2001, Nature Reviews Genetics.
[7] J. Gott,et al. Non‐templated addition of nucleotides to the 3′ end of nascent RNA during RNA editing in Physarum , 2001, The EMBO journal.
[8] Nicholas O. Davidson,et al. C-to-U RNA Editing: Mechanisms Leading to Genetic Diversity* , 2003, The Journal of Biological Chemistry.
[9] T. Matise,et al. Widespread RNA editing of embedded alu elements in the human transcriptome. , 2004, Genome research.
[10] Zipora Y. Fligelman,et al. Systematic identification of abundant A-to-I editing sites in the human transcriptome , 2004, Nature Biotechnology.
[11] Alexander Rich,et al. Widespread A-to-I RNA Editing of Alu-Containing mRNAs in the Human Transcriptome , 2004, PLoS biology.
[12] Erez Y. Levanon,et al. Evolutionarily conserved human targets of adenosine to inosine RNA editing , 2005, Nucleic acids research.
[13] Anton J. Enright,et al. RNA editing of human microRNAs , 2006, Genome Biology.
[14] Achim Schnaufer,et al. Complex management: RNA editing in trypanosomes. , 2005, Trends in biochemical sciences.
[15] Eli Eisenberg,et al. RNA editing level in the mouse is determined by the genomic repeat repertoire. , 2006, RNA.
[16] Marie Öhman,et al. RNA editing and alternative splicing: the importance of co‐transcriptional coordination , 2006, EMBO reports.
[17] P. Seeburg,et al. Modulation of microRNA processing and expression through RNA editing by ADAR deaminases , 2006, Nature Structural &Molecular Biology.
[18] P. Beal,et al. Breaking the central dogma by RNA editing. , 2006, Chemical reviews.
[19] T. Mikkelsen,et al. Altered adenosine-to-inosine RNA editing in human cancer. , 2007, Genome research.
[20] Robert D. Finn,et al. ProServer: a simple, extensible Perl DAS server , 2007, Bioinform..
[21] Molly Megraw,et al. Frequency and fate of microRNA editing in human brain , 2008, Nucleic acids research.
[22] J. Tate,et al. The RNA WikiProject: community annotation of RNA families. , 2008, RNA.
[23] J. Mattick,et al. RNA editing, DNA recoding and the evolution of human cognition , 2008, Trends in Neurosciences.
[24] A. Brennicke,et al. The process of RNA editing in plant mitochondria. , 2008, Mitochondrion.
[25] S. Maas,et al. Screening of human SNP database identifies recoding sites of A-to-I RNA editing. , 2008, RNA.
[26] Yiannis A. Savva,et al. Enhancing non-coding RNA information content with ADAR editing , 2009, Neuroscience Letters.
[27] G. Church,et al. Genome-Wide Identification of Human RNA Editing Sites by Parallel DNA Capturing and Sequencing , 2009, Science.
[28] E. Nevo,et al. Adenosine-to-inosine RNA editing shapes transcriptome diversity in primates , 2010, Proceedings of the National Academy of Sciences.
[29] H. Ueda,et al. Inosine cyanoethylation identifies A-to-I RNA editing sites in the human transcriptome. , 2010, Nature chemical biology.
[30] Pavel V. Baranov,et al. DARNED: a DAtabase of RNa EDiting in humans , 2010, Bioinform..
[31] K. Nishikura. Functions and regulation of RNA editing by ADAR deaminases. , 2010, Annual review of biochemistry.
[32] P. Baranov,et al. Identification of A-to-I RNA editing: Dotting the i’s in the human transcriptome , 2011, Biochemistry (Moscow).
[33] Bjorn-Erik Wulff,et al. Elucidating the inosinome: global approaches to adenosine-to-inosine RNA editing , 2011, Nature Reviews Genetics.
[34] Guihai Feng,et al. Computational Detection and Functional Analysis of Human Tissue-Specific A-to-I RNA Editing , 2011, PloS one.
[35] Mingyao Li,et al. Widespread RNA and DNA Sequence Differences in the Human Transcriptome , 2011, Science.
[36] H. P. Kang,et al. Extensive genomic and transcriptional diversity identified through massively parallel DNA and RNA sequencing of eighteen Korean individuals , 2011, Nature Genetics.
[37] Erez Y. Levanon,et al. Identification of Widespread Ultra-Edited Human RNAs , 2011, PLoS genetics.
[38] Heinz Feldmann,et al. A New Ebola Virus Nonstructural Glycoprotein Expressed through RNA Editing , 2011, Journal of Virology.
[39] B. Graveley. The developmental transcriptome of Drosophila melanogaster , 2010, Nature.
[40] Robert D. Finn,et al. Rfam: Wikipedia, clans and the “decimal” release , 2010, Nucleic Acids Res..
[41] M. Borodovsky,et al. A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment. , 2011, Molecular biology and evolution.
[42] Matthew W. Hahn,et al. Very Few RNA and DNA Sequence Differences in the Human Transcriptome , 2011, PloS one.
[43] R. Aphasizhev,et al. Uridine insertion/deletion editing in trypanosomes: a playground for RNA‐guided information transfer , 2011, Wiley interdisciplinary reviews. RNA.
[44] Michael M. Mwangi,et al. Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA editing targets in transcript 3′ UTRs , 2010, Nature Structural &Molecular Biology.
[45] Jin Billy Li,et al. Accurate identification of human Alu and non-Alu RNA editing sites , 2012, Nature Methods.
[46] M. Rosbash,et al. Nascent-seq indicates widespread cotranscriptional RNA editing in Drosophila. , 2012, Molecular cell.
[47] Wenwei Zhang,et al. Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome , 2012, Nature Biotechnology.
[48] Matthew A. Hibbs,et al. Canonical A-to-I and C-to-U RNA Editing Is Enriched at 3′UTRs and microRNA Target Sites in Multiple Mouse Tissues , 2012, PloS one.
[49] Jin Billy Li,et al. Comment on “Widespread RNA and DNA Sequence Differences in the Human Transcriptome” , 2012, Science.
[50] S. Maas. Posttranscriptional recoding by RNA editing. , 2012, Advances in protein chemistry and structural biology.
[51] Gautier Koscielny,et al. Ensembl 2012 , 2011, Nucleic Acids Res..
[52] Richard Durbin,et al. High levels of RNA-editing site conservation amongst 15 laboratory mouse strains , 2012, Genome Biology.
[53] Robert D. Finn,et al. Making your database available through Wikipedia: the pros and cons , 2011, Nucleic Acids Res..
[54] Jae-Hyung Lee,et al. Accurate identification of A-to-I RNA editing in human by transcriptome sequencing. , 2012, Genome research.
[55] Mary Goldman,et al. The UCSC Genome Browser database: extensions and updates 2011 , 2011, Nucleic Acids Res..
[56] Mary Goldman,et al. The UCSC Genome Browser database: extensions and updates 2013 , 2012, Nucleic Acids Res..
[57] G. Hong,et al. Nucleic Acids Research , 2015, Nucleic Acids Research.