Transcriptome analysis of the model grass Lolium temulentum exposed to green leaf volatiles

[1]  M. Erb,et al.  Molecular Dissection of Early Defense Signaling Underlying Volatile-Mediated Defense Regulation and Herbivore Resistance in Rice[OPEN] , 2019, Plant Cell.

[2]  J. Verwaeren,et al.  Green leaf volatile production by plants: a meta-analysis. , 2018, The New phytologist.

[3]  C. Wasternack,et al.  The Oxylipin Pathways: Biochemistry and Function. , 2018, Annual review of plant biology.

[4]  G. Howe,et al.  Modularity in Jasmonate Signaling for Multistress Resilience. , 2018, Annual review of plant biology.

[5]  Ruth C. Martin,et al.  Activation of MAP kinases by green leaf volatiles in grasses , 2018, BMC Research Notes.

[6]  Cathy H. Wu,et al.  UniProt: the universal protein knowledgebase , 2016, Nucleic Acids Research.

[7]  Nobuhiro Suzuki,et al.  ROS, Calcium, and Electric Signals: Key Mediators of Rapid Systemic Signaling in Plants1[OPEN] , 2016, Plant Physiology.

[8]  Ziyin Yang,et al.  Recent Advances in the Emission and Functions of Plant Vegetative Volatiles , 2016, Molecules.

[9]  V. Pastor,et al.  The 'prime-ome': towards a holistic approach to priming. , 2015, Trends in plant science.

[10]  D. Cosgrove.  Plant expansins: diversity and interactions with plant cell walls. , 2015, Current opinion in plant biology.

[11]  M. Maffei,et al.  Role of early signalling events in plant-insect interactions. , 2015, Journal of experimental botany.

[12]  R. Tenhaken.  Cell wall remodeling under abiotic stress , 2015, Front. Plant Sci..

[13]  Ruth C. Martin,et al.  Green leaf volatiles, fire and nonanoic acid activate MAPkinases in the model grass species Lolium temulentum , 2014, BMC Research Notes.

[14]  E. Farmer,et al.  The squeeze cell hypothesis for the activation of jasmonate synthesis in response to wounding. , 2014, The New phytologist.

[15]  P. Seo,et al.  Airborne signals from salt-stressed Arabidopsis plants trigger salinity tolerance in neighboring plants , 2014, Plant signaling & behavior.

[16]  N. Suzuki,et al.  ROS as key players in plant stress signalling. , 2014, Journal of experimental botany.

[17]  D. Qi,et al.  Transcriptome Analysis Reveals Common and Distinct Mechanisms for Sheepgrass (Leymus chinensis) Responses to Defoliation Compared to Mechanical Wounding , 2014, PloS one.

[18]  K. Matsui,et al.  Intermittent exposure to traces of green leaf volatiles triggers the production of (Z)-3-hexen-1-yl acetate and (Z)-3-hexen-1-ol in exposed plants , 2013, Plant signaling & behavior.

[19]  J. Ton,et al.  Primed plants do not forget , 2013 .

[20]  M. Haring,et al.  Green Leaf Volatiles: A Plant’s Multifunctional Weapon against Herbivores and Pathogens , 2013, International journal of molecular sciences.

[21]  G. Felton,et al.  Priming of antiherbivore defensive responses in plants , 2013, Insect science.

[22]  K. Matsui,et al.  E-2-hexenal promotes susceptibility to Pseudomonas syringae by activating jasmonic acid pathways in Arabidopsis , 2013, Front. Plant Sci..

[23]  Heng Li.  Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM , 2013, 1303.3997.

[24]  David G Hendrickson,et al.  Differential analysis of gene regulation at transcript resolution with RNA-seq , 2012, Nature Biotechnology.

[25]  C. Bendixen,et al.  The genome and transcriptome of perennial ryegrass mitochondria , 2013, BMC Genomics.

[26]  A. Kobayashi,et al.  Green leaf volatiles enhance methyl jasmonate response in Arabidopsis. , 2012, Journal of bioscience and bioengineering.

[27]  M. Klimecka,et al.  Maize calcium-dependent protein kinase (ZmCPK11): local and systemic response to wounding, regulation by touch and components of jasmonate signaling. , 2012, Physiologia plantarum.

[28]  J. Kudla,et al.  Analysis of calcium signaling pathways in plants. , 2012, Biochimica et biophysica acta.

[29]  Ruth C. Martin,et al.  Abiotic stresses activate a MAPkinase in the model grass species Lolium temulentum. , 2012, Journal of plant physiology.

[30]  W. Boland,et al.  Plant defense against herbivores: chemical aspects. , 2012, Annual review of plant biology.

[31]  G. Howe,et al.  Role of phytohormones in insect-specific plant reactions. , 2012, Trends in plant science.

[32]  K. Matsui,et al.  Intermittent exposure to traces of green leaf volatiles triggers a plant response , 2012, Scientific Reports.

[33]  Diqiu Yu,et al.  The role of WRKY transcription factors in plant abiotic stresses. , 2012, Biochimica et biophysica acta.

[34]  Brian Fenton,et al.  Plant responses to insect herbivory: interactions between photosynthesis, reactive oxygen species and hormonal signalling pathways. , 2012, Plant, cell & environment.

[35]  U. Conrath.  Molecular aspects of defence priming. , 2011, Trends in plant science.

[36]  N. Friedman,et al.  Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data , 2011, Nature Biotechnology.

[37]  E. Suzuki,et al.  OsJAR1 and OsJAR2 are jasmonyl-L-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling. , 2011, Biochemical and biophysical research communications.

[38]  D. K. Weaver,et al.  Cereal crop volatile organic compound induction after mechanical injury, beetle herbivory (Oulema spp.), or fungal infection (Fusarium spp.). , 2011, Journal of plant physiology.

[39]  Marcel Martin.  Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .

[40]  J. Stratmann,et al.  Wounding systemically activates a mitogen-activated protein kinase in forage and turf grasses. , 2011, Plant science : an international journal of experimental plant biology.

[41]  M. Al-Whaibi.  Plant heat-shock proteins: A mini review , 2011 .

[42]  N. Tuteja,et al.  Mitogen-activated protein kinase signaling in plants under abiotic stress , 2011, Plant signaling & behavior.

[43]  Arp Schnittger,et al.  The age of protein kinases. , 2011, Methods in molecular biology.

[44]  Hubert H. Felle,et al.  Alamethicin-induced electrical long distance signaling in plants , 2010, Plant signaling & behavior.

[45]  I. Baldwin.  Plant volatiles , 2010, Current Biology.

[46]  J. Mundy,et al.  Mitogen-activated protein kinase signaling in plants. , 2010, Annual review of plant biology.

[47]  Q. Shen,et al.  WRKY transcription factors. , 2010, Trends in plant science.

[48]  J. Gershenzon,et al.  Multiple stress factors and the emission of plant VOCs. , 2010, Trends in plant science.

[49]  F. Loreto,et al.  Abiotic stresses and induced BVOCs. , 2010, Trends in plant science.

[50]  I. Baldwin,et al.  New insights into the early biochemical activation of jasmonic acid biosynthesis in leaves , 2010, Plant signaling & behavior.

[51]  C. Rodriguez‐Saona,et al.  New evidence for a multi-functional role of herbivore-induced plant volatiles in defense against herbivores , 2010, Plant signaling & behavior.

[52]  M. Erb,et al.  Silencing OsHI-LOX makes rice more susceptible to chewing herbivores, but enhances resistance to a phloem feeder. , 2009, The Plant journal : for cell and molecular biology.

[53]  G. Howe,et al.  Top hits in contemporary JAZ: an update on jasmonate signaling. , 2009, Phytochemistry.

[54]  I. Baldwin,et al.  Herbivory-induced signalling in plants: perception and action. , 2009, Plant, cell & environment.

[55]  G. Howe,et al.  The wound hormone jasmonate. , 2009, Phytochemistry.

[56]  J. Dangl,et al.  The Plant NADPH Oxidase RBOHD Mediates Rapid Systemic Signaling in Response to Diverse Stimuli , 2009, Science Signaling.

[57]  M. Heil.  Damaged-self recognition in plant herbivore defence. , 2009, Trends in plant science.

[58]  Gonçalo R. Abecasis,et al.  The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..

[59]  E. L. Connolly,et al.  Iron uptake mechanisms in plants: Functions of the FRO family of ferric reductases , 2009 .

[60]  T. Furuichi,et al.  Plant volatiles regulate the activities of Ca2+-permeable channels and promote cytoplasmic calcium transients in Arabidopsis leaf cells , 2009, Plant signaling & behavior.

[61]  Ruth C. Martin,et al.  Evaluation of reference genes for quantitative RT-PCR in Lolium temulentum under abiotic stress , 2009 .

[62]  S. He,et al.  Mitogen-Activated Protein Kinases 3 and 6 Are Required for Full Priming of Stress Responses in Arabidopsis thaliana[W][OA] , 2009, The Plant Cell Online.

[63]  G. Agrawal,et al.  Rice OsSIPK and its orthologs: a "central master switch" for stress responses. , 2009, Biochemical and biophysical research communications.

[64]  Hoo Sun Chung,et al.  Jasmonate signaling: a conserved mechanism of hormone sensing. , 2008, Current opinion in plant biology.

[65]  I. Baldwin,et al.  Induced Plant Defenses in the Natural Environment: Nicotiana attenuata WRKY3 and WRKY6 Coordinate Responses to Herbivory[W] , 2008, The Plant Cell Online.

[66]  G. Howe,et al.  Plant immunity to insect herbivores. , 2008, Annual review of plant biology.

[67]  J. Carlson,et al.  Plant Defense Priming against Herbivores: Getting Ready for a Different Battle1 , 2008, Plant Physiology.

[68]  Walter P. Suza,et al.  The role of JAR1 in Jasmonoyl-l-isoleucine production during Arabidopsis wound response , 2008, Planta.

[69]  J. Carlson,et al.  Plant Defense Priming against Herbivores: Getting Ready for a Different Battle1 , 2008, Plant Physiology.

[70]  Axel Mithöfer,et al.  Insects feeding on plants: rapid signals and responses preceding the induction of phytochemical release. , 2007, Phytochemistry.

[71]  Axel Mithöfer,et al.  Before gene expression: early events in plant-insect interaction. , 2007, Trends in plant science.

[72]  J. Carlson,et al.  Within-plant signalling via volatiles overcomes vascular constraints on systemic signalling and primes responses against herbivores. , 2007, Ecology letters.

[73]  M. Heil,et al.  Within-plant signaling by volatiles leads to induction and priming of an indirect plant defense in nature , 2007, Proceedings of the National Academy of Sciences.

[74]  M. Foolad,et al.  Roles of glycine betaine and proline in improving plant abiotic stress resistance , 2007 .

[75]  Narendra Tuteja,et al.  Calcium Signaling Network in Plants , 2007, Plant signaling & behavior.

[76]  M. Held,et al.  Priming by airborne signals boosts direct and indirect resistance in maize. , 2006, The Plant journal : for cell and molecular biology.

[77]  Hubert H. Felle,et al.  Systemic signalling in barley through action potentials , 2007, Planta.

[78]  T. Gianfagna,et al.  Volatile compounds of tufted hairgrass , 2006 .

[79]  N. Dudareva,et al.  Plant Volatiles: Recent Advances and Future Perspectives , 2006 .

[80]  C. Pieterse,et al.  Significance of inducible defense-related proteins in infected plants. , 2006, Annual review of phytopathology.

[81]  Lin Fang,et al.  WEGO: a web tool for plotting GO annotations , 2006, Nucleic Acids Res..

[82]  K. Matsui.  Green leaf volatiles: hydroperoxide lyase pathway of oxylipin metabolism. , 2006, Current opinion in plant biology.

[83]  Richard Karban,et al.  Damage-induced resistance in sagebrush: volatiles are key to intra- and interplant communication. , 2006, Ecology.

[84]  E. Pichersky,et al.  The Chemical Diversity of Floral Scent , 2006 .

[85]  Ivo Feussner,et al.  The wound response in tomato--role of jasmonic acid. , 2006, Journal of plant physiology.

[86]  I. Baldwin,et al.  Priming of plant defense responses in nature by airborne signaling between Artemisia tridentata and Nicotiana attenuata , 2006, Oecologia.

[87]  Y. Chung,et al.  Analysis of differentially expressed transcripts of fungal elicitor- and wound-treated wild rice (Oryza grandiglumis) , 2005, Journal of Plant Research.

[88]  Anthony L. Schilmiller,et al.  Systemic signaling in the wound response. , 2005, Current opinion in plant biology.

[89]  J. Tumlinson,et al.  Systemic induction of volatile release in cotton: How specific is the signal to herbivory? , 2005, Planta.

[90]  N. Novak,et al.  MAIZE GENES INDUCED BY HERBIVORY AND VOLICITIN , 2004, Journal of Chemical Ecology.

[91]  A. Schaller.  A cut above the rest: the regulatory function of plant proteases , 2004, Planta.

[92]  Stuart A. Casson,et al.  Characterization of a proteinase inhibitor from Brachypodium distachyon suggests the conservation of defence signalling pathways between dicotyledonous plants and grasses. , 2004, Molecular plant pathology.

[93]  E. Le Deunff,et al.  Oxidative burst and expression of germin/oxo genes during wounding of ryegrass leaf blades: comparison with senescence of leaf sheaths. , 2004, The Plant journal : for cell and molecular biology.

[94]  A. Altman,et al.  Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. , 2004, Trends in plant science.

[95]  G. Agrawal,et al.  Rice octadecanoid pathway. , 2004, Biochemical and biophysical research communications.

[96]  J. Tumlinson,et al.  Airborne signals prime plants against insect herbivore attack. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[97]  A. Diévart,et al.  LRR-containing receptors regulating plant development and defense , 2003, Development.

[98]  Futie Zhang,et al.  Differential gene expression in response to brown planthopper feeding in rice. , 2004, Journal of plant physiology.

[99]  Cathy H. Wu,et al.  UniProt: the Universal Protein knowledgebase , 2004, Nucleic Acids Res..

[100]  J. Tumlinson,et al.  Volatiles released from cotton plants in response to Helicoverpa zea feeding damage on cotton flower buds , 2004, Planta.

[101]  Y. Choi,et al.  Methyl jasmonate as a vital substance in plants. , 2003, Trends in genetics : TIG.

[102]  T. Kuang,et al.  Proteomics approach to identify wound‐response related proteins from rice leaf sheath , 2003, Proteomics.

[103]  G. Agrawal,et al.  Octadecanoid signaling component "burst" in rice (Oryza sativa L.) seedling leaves upon wounding by cut and treatment with fungal elicitor chitosan. , 2002, Biochemical and biophysical research communications.

[104]  Hur-Song Chang,et al.  Transcriptional Profiling Reveals Novel Interactions between Wounding, Pathogen, Abiotic Stress, and Hormonal Responses in Arabidopsis1,212 , 2002, Plant Physiology.

[105]  M. Saitoh,et al.  Local and systemic wound-induction of RNase and nuclease activities in Arabidopsis: RNS1 as a marker for a JA-independent systemic signaling pathway. , 2002, The Plant journal : for cell and molecular biology.

[106]  James H. Tumlinson,et al.  The influence of intact-plant and excised-leaf bioassay designs on volicitin- and jasmonic acid-induced sesquiterpene volatile release in Zea mays , 2001, Planta.

[107]  B. Gaut,et al.  Molecular evolution of the wound-induced serine protease inhibitor wip1 in Zea and related genera. , 2001, Molecular biology and evolution.

[108]  J. Sánchez-Serrano,et al.  Wound signalling in plants. , 2001, Journal of experimental botany.

[109]  M. C. Tamayo,et al.  Accumulation of a maize proteinase inhibitor in response to wounding and insect feeding, and characterization of its activity toward digestive proteinases of Spodoptera littoralis larvae , 2000, Planta.

[110]  P. Reymond,et al.  Differential Gene Expression in Response to Mechanical Wounding and Insect Feeding in Arabidopsis , 2000, Plant Cell.

[111]  A. Bleecker,et al.  Ethylene: a gaseous signal molecule in plants. , 2000, Annual review of cell and developmental biology.

[112]  T. G. Custer,et al.  Emissions of volatile organic compounds from cut grass and clover are enhanced during the drying process , 1999 .

[113]  David L. Wheeler,et al.  GenBank , 2015, Nucleic Acids Res..

[114]  R. Dixon,et al.  Evidence for Chewing Insect-Specific Molecular Events Distinct from a General Wound Response in Leaves , 1997, Plant physiology.

[115]  E. Titarenko,et al.  Jasmonic Acid-Dependent and -Independent Signaling Pathways Control Wound-Induced Gene Activation in Arabidopsis thaliana , 1997, Plant physiology.

[116]  John C. Walker,et al.  Plant Protein Kinase Families and Signal Transduction , 1995, Plant physiology.

[117]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[118]  Michael D Greenfield,et al.  Wound-Induced Proteinase Inhibitor in Plant Leaves: A Possible Defense Mechanism against Insects , 1972, Science.

[119]  L. T. Evans.  Lolium temulentum L., a Long-day Plant requiring only One Inductive Photocycle , 1958, Nature.