The peopling of the last Green Sahara revealed by high-coverage resequencing of trans-Saharan patrilineages

[1]  P. Moral,et al.  The peopling of the last Green Sahara revealed by high-coverage resequencing of trans-Saharan patrilineages , 2018, Genome Biology.

[2]  Adeline Le Cabec,et al.  New fossils from Jebel Irhoud, Morocco and the pan-African origin of Homo sapiens , 2018, Nature.

[3]  K. Harvati,et al.  Ancient Egyptian mummy genomes suggest an increase of Sub-Saharan African ancestry in post-Roman periods , 2017, Nature Communications.

[4]  G. Perry,et al.  Dispersals and genetic adaptation of Bantu-speaking populations in Africa and North America , 2017, Science.

[5]  F. Cruciani,et al.  Forensic data and microvariant sequence characterization of 27 Y-STR loci analyzed in four Eastern African countries. , 2017, Forensic science international. Genetics.

[6]  G. Hellenthal,et al.  Recent Historical Migrations Have Shaped the Gene Pool of Arabs and Berbers in North Africa , 2016, Molecular biology and evolution.

[7]  E. Zeggini,et al.  Chad Genetic Diversity Reveals an African History Marked by Multiple Holocene Eurasian Migrations , 2016, American journal of human genetics.

[8]  Maria Cerezo,et al.  Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences , 2016, Nature Genetics.

[9]  Vysaul B. Nyirongo,et al.  Admixture into and within sub-Saharan Africa , 2016, bioRxiv.

[10]  M. Stoneking,et al.  Refining the Y chromosome phylogeny with southern African sequences , 2015, Human Genetics.

[11]  Anders Eriksson,et al.  Upper Palaeolithic genomes reveal deep roots of modern Eurasians , 2015, Nature Communications.

[12]  Natalie M. Myres,et al.  Regional Differences in the Accumulation of SNPs on the Male-Specific Portion of the Human Y Chromosome Replicate Autosomal Patterns: Implications for Genetic Dating , 2015, PloS one.

[13]  R. Scozzari,et al.  Phylogeographic Refinement and Large Scale Genotyping of Human Y Chromosome Haplogroup E Provide New Insights into the Dispersal of Early Pastoralists in the African Continent , 2015, Genome biology and evolution.

[14]  R. Durbin,et al.  Tracing the Route of Modern Humans out of Africa by Using 225 Human Genome Sequences from Ethiopians and Egyptians , 2015, American journal of human genetics.

[15]  M. Jobling,et al.  Large-scale recent expansion of European patrilineages shown by population resequencing , 2015, Nature Communications.

[16]  F. Cucca,et al.  Detection of phylogenetically informative polymorphisms in the entire euchromatic portion of human Y chromosome from a Sardinian sample , 2015, BMC Research Notes.

[17]  Michael C. Westaway,et al.  A recent bottleneck of Y chromosome diversity coincides with a global change in culture , 2015, Genome research.

[18]  Chiara Batini,et al.  The Y-Chromosome Tree Bursts into Leaf: 13,000 High-Confidence SNPs Covering the Majority of Known Clades , 2014, Molecular biology and evolution.

[19]  Heng Li,et al.  Genome sequence of a 45,000-year-old modern human from western Siberia , 2014, Nature.

[20]  Richard P. Jennings,et al.  Earliest evidence for the structure of Homo sapiens populations in Africa , 2014 .

[21]  K. Manning,et al.  The demographic response to Holocene climate change in the Sahara , 2014 .

[22]  D. Falush,et al.  A Genetic Atlas of Human Admixture History , 2014, Science.

[23]  Natalie M. Myres,et al.  An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa , 2014, Genome research.

[24]  Bonnie Berger,et al.  Ancient human genomes suggest three ancestral populations for present-day Europeans , 2013, Nature.

[25]  Koichiro Tamura,et al.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.

[26]  D. Comas,et al.  Genome-Wide and Paternal Diversity Reveal a Recent Origin of Human Populations in North Africa , 2013, PloS one.

[27]  P. deMenocal,et al.  Abrupt Shifts in Horn of Africa Hydroclimate Since the Last Glacial Maximum , 2013, Science.

[28]  A. Roberts,et al.  Dynamics of Green Sahara Periods and Their Role in Hominin Evolution , 2013, PloS one.

[29]  S. Tofanelli,et al.  Low-Pass DNA Sequencing of 1200 Sardinians Reconstructs European Y-Chromosome Phylogeny , 2013, Science.

[30]  N. Bradman,et al.  Evidence from Y-chromosome analysis for a late exclusively eastern expansion of the Bantu-speaking people , 2012, European Journal of Human Genetics.

[31]  Á. Carracedo,et al.  The genetic landscape of Equatorial Guinea and the origin and migration routes of the Y chromosome haplogroup R-V88 , 2012, European Journal of Human Genetics.

[32]  Jake K. Byrnes,et al.  Genomic Ancestry of North Africans Supports Back-to-Africa Migrations , 2012, PLoS genetics.

[33]  Heng Li,et al.  A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data , 2011, Bioinform..

[34]  Natalie M. Myres,et al.  Signatures of the preagricultural peopling processes in sub-Saharan Africa as revealed by the phylogeography of early Y chromosome lineages. , 2011, Molecular biology and evolution.

[35]  D. Comas,et al.  The Bantu expansion revisited: a new analysis of Y chromosome variation in Central Western Africa , 2011, Molecular ecology.

[36]  M. Stoneking,et al.  Y-chromosomal variation in sub-Saharan Africa: insights into the history of Niger-Congo groups. , 2011, Molecular biology and evolution.

[37]  R. Scozzari,et al.  A New Topology of the Human Y Chromosome Haplogroup E1b1 (E-P2) Revealed through the Use of Newly Characterized Binary Polymorphisms , 2011, PloS one.

[38]  N. Drake,et al.  Ancient watercourses and biogeography of the Sahara explain the peopling of the desert , 2010, Proceedings of the National Academy of Sciences.

[39]  R. Scozzari,et al.  Human Y chromosome haplogroup R-V88: a paternal genetic record of early mid Holocene trans-Saharan connections and the spread of Chadic languages , 2010, European Journal of Human Genetics.

[40]  F. Cucca,et al.  A Comparison of Y-Chromosome Variation in Sardinia and Anatolia Is More Consistent with Cultural Rather than Demic Diffusion of Agriculture , 2010, PloS one.

[41]  Á. Carracedo,et al.  Digging deeper into East African human Y chromosome lineages , 2010, Human Genetics.

[42]  Robert B. Hartlage,et al.  This PDF file includes: Materials and Methods , 2009 .

[43]  P. Underhill,et al.  Y chromosome diversity, human expansion, drift, and cultural evolution , 2009, Proceedings of the National Academy of Sciences.

[44]  D. Comas,et al.  Genetic and demographic implications of the Bantu expansion: insights from human paternal lineages. , 2009, Molecular biology and evolution.

[45]  Gonçalo R. Abecasis,et al.  The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..

[46]  Scott M. Williams,et al.  The Genetic Structure and History of Africans and African Americans , 2009, Science.

[47]  Richard Durbin,et al.  Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .

[48]  P. Underhill,et al.  Y-chromosome variation among Sudanese: restricted gene flow, concordance with language, geography, and history. , 2008, American journal of physical anthropology.

[49]  Enzo Cocca,et al.  Lakeside Cemeteries in the Sahara: 5000 Years of Holocene Population and Environmental Change , 2008, PloS one.

[50]  R. J. Herrera,et al.  Y-Chromosomal Diversity in Lebanon Is Structured by Recent Historical Events , 2008, American journal of human genetics.

[51]  C. Bravi,et al.  The Phylogeny of the Four Pan-American MtDNA Haplogroups: Implications for Evolutionary and Disease Studies , 2008, PloS one.

[52]  C. Robino,et al.  Analysis of Y-chromosomal SNP haplogroups and STR haplotypes in an Algerian population sample , 2008, International Journal of Legal Medicine.

[53]  A. Rambaut,et al.  BEAST: Bayesian evolutionary analysis by sampling trees , 2007, BMC Evolutionary Biology.

[54]  F. Crivellaro,et al.  Tracing past human male movements in northern/eastern Africa and western Eurasia: new clues from Y-chromosomal haplogroups E-M78 and J-M12. , 2007, Molecular biology and evolution.

[55]  J. Wright.  The Trans-Saharan Slave Trade , 2007 .

[56]  Rudolph Kuper,et al.  Climate-Controlled Holocene Occupation in the Sahara: Motor of Africa's Evolution , 2006, Science.

[57]  N. Brooks.  Cultural responses to aridity in the Middle Holocene and increased social complexity , 2006 .

[58]  N. Maca-Meyer,et al.  Isolates in a corridor of migrations: a high-resolution analysis of Y-chromosome variation in Jordan , 2005, Journal of Human Genetics.

[59]  Giovanni Destro-Bisol,et al.  Contrasting patterns of Y chromosome and mtDNA variation in Africa: evidence for sex-biased demographic processes , 2005, European Journal of Human Genetics.

[60]  Á. Carracedo,et al.  The genetic legacy of western Bantu migrations , 2005, Human Genetics.

[61]  M. Feldman,et al.  HUMAN MUTATION 24:248^260 (2004) RESEARCH ARTICLE Reconstruction of Patrilineages and Matrilineages of Samaritans and Other Israeli Populations From Y-Chromosome and Mitochondrial DNA Sequence Variation , 2022 .

[62]  C. Tyler-Smith,et al.  A predominantly neolithic origin for Y-chromosomal DNA variation in North Africa. , 2004, American journal of human genetics.

[63]  A. Torroni,et al.  Phylogeographic analysis of haplogroup E3b (E-M215) y chromosomes reveals multiple migratory events within and out of Africa. , 2004, American journal of human genetics.

[64]  P. Underhill,et al.  Origin, diffusion, and differentiation of Y-chromosome haplogroups E and J: inferences on the neolithization of Europe and later migratory events in the Mediterranean area. , 2004, American journal of human genetics.

[65]  R. J. Herrera,et al.  The Levant versus the Horn of Africa: evidence for bidirectional corridors of human migrations. , 2004, American journal of human genetics.

[66]  T. Graves,et al.  The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes , 2003, Nature.

[67]  A. Torroni,et al.  Extensive female-mediated gene flow from sub-Saharan Africa into near eastern Arab populations. , 2003, American journal of human genetics.

[68]  P. Underhill,et al.  Excavating Y-chromosome haplotype strata in Anatolia , 2003, Human Genetics.

[69]  M. Adams,et al.  Recent Segmental Duplications in the Human Genome , 2002, Science.

[70]  P. Underhill,et al.  A back migration from Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y-chromosome haplotypes. , 2002, American journal of human genetics.

[71]  P. Majumder,et al.  The Y chromosome pool of Jews as part of the genetic landscape of the Middle East. , 2001, American journal of human genetics.

[72]  B. Trask,et al.  Segmental duplications: organization and impact within the current human genome project assembly. , 2001, Genome research.

[73]  L L Cavalli-Sforza,et al.  The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: a Y chromosome perspective. , 2000, Nature Reviews Genetics.

[74]  Li Jin,et al.  Y chromosome sequence variation and the history of human populations , 2000, Nature Genetics.

[75]  H. Bandelt,et al.  mtDNA variation among Greenland Eskimos: the edge of the Beringian expansion. , 2000, American journal of human genetics.

[76]  J. Jurka.  Repbase update: a database and an electronic journal of repetitive elements. , 2000, Trends in genetics : TIG.

[77]  Joseph D. Ortiz,et al.  Abrupt onset and termination of the African Humid Period:rapid climate responses to gradual insolation forcing , 2000 .

[78]  H. Bandelt,et al.  Median-joining networks for inferring intraspecific phylogenies. , 1999, Molecular biology and evolution.

[79]  H. Bandelt,et al.  mtDNA analysis reveals a major late Paleolithic population expansion from southwestern to northeastern Europe. , 1998, American journal of human genetics.