Influence of the farming system and vine variety on yeast communities associated with grape berries.

Wine production in most countries is based on the use of commercial strains leading to the colonisation of the wineries by these strains with the consequent reduction of autochthonous biodiversity. This implies that wine styles could therefore become standardised. The vineyard could be an important source of native yeasts of oenological interest. For this reason the objective of this study was to compare two agronomic conditions with the aim of preserving yeast biodiversity in the vineyard. A three year sampling plan was designed to evaluate the influence of different agronomic parameters on the biodiversity of fermentative grape yeasts. Thus two vineyards, one organic and one conventional, with three different grape varieties (Shiraz, Grenache and Barbera) were chosen. In total, 27 samples were collected from both vineyards. Of these, 1080 colonies were isolated and a total of 9 species were identified. The strains identified as Saccharomyces cerevisiae were genotyped by microsatellite analysis obtaining nine different electrophoretic patterns. Classical ecology indexes were used to obtain the richness (S), the biodiversity (H') and the dominance (D) of the species studied. The results indicated a clear influence on grape associated yeast diversity of the phytosanitary treatment used in the vineyard. This is the first time that classical ecology indexes have been used to study the ecology of the spontaneous fermentation of grape musts and the species Candida sorbosa and Pichia toletana have been described in vineyards of the Madrid winegrowing region.

[1]  C. Martínez,et al.  Yeasts associated to Malbec grape berries from Mendoza, Argentina , 2005, Journal of applied microbiology.

[2]  A. Querol,et al.  Molecular identification and characterization of wine yeasts isolated from Tenerife (Canary Island, Spain) , 2006, Journal of applied microbiology.

[3]  R. Tofalo,et al.  Molecular identification and osmotolerant profile of wine yeasts that ferment a high sugar grape must. , 2009, International journal of food microbiology.

[4]  Jingyu Chen,et al.  Yeast species associated with wine grapes in China. , 2010, International journal of food microbiology.

[5]  E. Nerantzis,et al.  Biological acidification during grape must fermentation using mixed cultures of Kluyveromyces thermotolerans and Saccharomyces cerevisiae , 2007 .

[6]  M. Polsinelli,et al.  On the origins of wine yeast. , 1999, Research in microbiology.

[7]  P. Manzanares,et al.  Rational selection of non-Saccharomyces wine yeasts for mixed starters based on ester formation and enological traits. , 2008, Food microbiology.

[8]  M. Casal,et al.  Dissemination and survival of commercial wine yeast in the vineyard: a large-scale, three-years study. , 2005, FEMS yeast research.

[9]  S. Martínez-Rodríguez,et al.  Molecular characterization and oenological properties of wine yeasts isolated during spontaneous fermentation of six varieties of grape must , 2004 .

[10]  J. Guillamón,et al.  Isolation and identification of yeasts associated with vineyard and winery by RFLP analysis of ribosomal genes and mitochondrial DNA. , 2002, Microbiological research.

[11]  Jeremy D. Wilson,et al.  Does organic farming benefit biodiversity , 2005 .

[12]  Jim Schieck,et al.  Indices for monitoring biodiversity change: Are some more effective than others? , 2009 .

[13]  J. Guillamón,et al.  Rapid identification of wine yeast species based on RFLP analysis of the ribosomal internal transcribed spacer (ITS) region , 1998, Archives of Microbiology.

[14]  Aline Lonvaud-Funel,et al.  Genetic characterization and phenotypic variability in Torulaspora delbrueckii species: Potential applications in the wine industry. , 2009, International journal of food microbiology.

[15]  P. Ribereau-gayon,et al.  Handbook of Enology , 2001 .

[16]  R. Romano,et al.  Indigenous yeast communities in the environment of “Rovello bianco” grape variety and their use in commercial white wine fermentation , 2010 .

[17]  L. Cocolin,et al.  Yeast Diversity and Persistence in Botrytis-Affected Wine Fermentations , 2002, Applied and Environmental Microbiology.

[18]  T. White Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics , 1990 .

[19]  P. Hrelia,et al.  Antioxidant effectiveness of organically and non-organically grown red oranges in cell culture systems , 2006, European journal of nutrition.

[20]  G. Fleet Yeast interactions and wine flavour. , 2003, International journal of food microbiology.

[21]  J. Úbeda,et al.  Typing of non-Saccharomyces yeasts with enzymatic activities of interest in wine-making. , 2000, International journal of food microbiology.

[22]  E. Vaudano,et al.  Discrimination of Saccharomyces cerevisiae wine strains using microsatellite multiplex PCR and band pattern analysis. , 2008, Food microbiology.

[23]  L. Rossetti,et al.  Rapid identification of dairy lactic acid bacteria by M13-generated, RAPD-PCR fingerprint databases. , 2005, Journal of microbiological methods.

[24]  G. Fleet,et al.  The yeast ecology of wine grapes. , 2002 .

[25]  Vincent Renouf,et al.  Understanding the microbial ecosystem on the grape berry surface through numeration and identification of yeast and bacteria , 2005 .

[26]  M. Casal,et al.  Biodiversity of Saccharomyces yeast strains from grape berries of wine-producing areas using starter commercial yeasts. , 2007, FEMS yeast research.

[27]  E. Miambi,et al.  Cluster analysis, richness and biodiversity indexes derived from denaturing gradient gel electrophoresis fingerprints of bacterial communities demonstrate that traditional maize fermentations are driven by the transformation process. , 2000, International journal of food microbiology.

[28]  J. Schnürer,et al.  Biotechnology, physiology and genetics of the yeast Pichia anomala. , 2006, FEMS yeast research.

[29]  C. Varela,et al.  Differential synthesis of fermentative aroma compounds of two related commercial wine yeast strains , 2009 .

[30]  Thomas J. White,et al.  PCR protocols: a guide to methods and applications. , 1990 .

[31]  S. Buxaderas,et al.  Different commercial yeast strains affecting the volatile and sensory profile of cava base wine. , 2008, International journal of food microbiology.

[32]  A. Querol,et al.  Identification of yeasts by RFLP analysis of the 5.8S rRNA gene and the two ribosomal internal transcribed spacers. , 1999, International journal of systematic bacteriology.

[33]  R. Callejón,et al.  Volatile and sensory profile of organic red wines produced by different selected autochthonous and commercial Saccharomyces cerevisiae strains. , 2010, Analytica chimica acta.

[34]  M. Kelly,et al.  Study of polyamines and their precursor amino acids in Grenache noir and Syrah grapes and wine of the Rhone Valley , 2007 .

[35]  P. Andrade,et al.  A preliminary study of non-coloured phenolics in wines of varietal white grapes (códega, gouveio and malvasia fina): effects of grape variety, grape maturation and technology of winemaking , 1999 .

[36]  G. Nychas,et al.  Yeast Populations Residing on Healthy or Botrytis-Infected Grapes from a Vineyard in Attica, Greece , 2007, Applied and Environmental Microbiology.

[37]  N. Čadež,et al.  Yeasts isolated from three varieties of grapes cultivated in different locations of the Dolenjska vine-growing region, Slovenia. , 2006, International journal of food microbiology.

[38]  P. Ribereau-gayon,et al.  The microbiology of wine and vinifications , 2006 .

[39]  A. Querol,et al.  RFLP analysis of the ribosomal internal transcribed spacers and the 5.8S rRNA gene region of the genus Saccharomyces: a fast method for species identification and the differentiation of flor yeasts , 2000, Antonie van Leeuwenhoek.

[40]  I. S. Pretorius,et al.  Tailoring wine yeast for the new millennium: novel approaches to the ancient art of winemaking , 2000, Yeast.

[41]  G. Kulkarni,et al.  Natural yeast flora of different varieties of grapes used for wine making in India. , 2009, Food microbiology.

[42]  D. Oliva,et al.  Analysis of non‐Saccharomyces yeast populations isolated from grape musts from Sicily (Italy) , 2008, Journal of applied microbiology.

[43]  M. Vilanova,et al.  Contribution by Saccharomyces cerevisiae yeast to fermentative flavour compounds in wines from cv. Albariño , 2006, Journal of Industrial Microbiology & Biotechnology.

[44]  I. Masneuf-Pomarède,et al.  Dynamics and diversity of non-Saccharomyces yeasts during the early stages in winemaking. , 2008, International journal of food microbiology.

[45]  Danilo Ercolini,et al.  Yeast dynamics during spontaneous wine fermentation of the Catalanesca grape. , 2007, International journal of food microbiology.

[46]  M. Sipiczki,et al.  Taxonomic reclassification of Candida stellata strains reveals frequent occurrence of Candida zemplinina in wine fermentation. , 2008, FEMS yeast research.

[47]  J. Guillamón,et al.  Yeast population dynamics in spontaneous fermentations: Comparison between two different wine-producing areas over a period of three years , 2001, Antonie van Leeuwenhoek.

[48]  K. Walsh,et al.  Using ecological diversity measures with bacterial communities. , 2003, FEMS microbiology ecology.

[49]  C. Benbrook,et al.  Pesticide residues in conventional, integrated pest management (IPM)-grown and organic foods: insights from three US data sets , 2002, Food additives and contaminants.

[50]  C. Martínez,et al.  Effect of wine yeast monoculture practice on the biodiversity of non‐Saccharomyces yeasts , 2004, Journal of applied microbiology.

[51]  Katrin Woese,et al.  A Comparison of Organically and Conventionally Grown Foods—Results of a Review of the Relevant Literature , 1997 .

[52]  M. Ciani Biodiversity and Biotechnology of Wine Yeasts , 2002 .

[53]  J. Simal-Gándara,et al.  Influence of grape variety, vine system and enological treatments on the colour stability of young red wines , 2007 .

[54]  H. Erten,et al.  Yeast Flora During the Fermentation of Wines made from Vitis vinifera L. cv. Emir and Kalecik Karasi grown in Anatolia , 2005 .