Prediction of Similarities Among Rheumatic Diseases

We introduce a method for extracting hidden patterns seen in rheumatic diseases by using articles from the widely used biomedical database MEDLINE. Rheumatic diseases affect hundreds of millions of people worldwide and lead to substantial loss of functioning and mobility. Diagnosing rheumatic diseases can be difficult because some symptoms are common to many of them. We use Facta system as a biomedical text mining tool for finding symptoms and then create a dataset with the frequencies of symptoms for each disease and apply hierarchical clustering analysis to find similarities between diseases. Clustering analysis yields four distinct types or groups of rheumatic diseases. Although our results cannot remove all the uncertainty for the diagnosis of rheumatic diseases, we believe they can contribute to the diagnosis of rheumatic diseases to a certain extent. We hope that some similarities exposed can provide additional information at the stage of decision-making.

[1]  Miguel A. Andrade-Navarro,et al.  Update on XplorMed: a web server for exploring scientific literature , 2003, Nucleic Acids Res..

[2]  Sophia Ananiadou,et al.  FACTA: a text search engine for finding associated biomedical concepts , 2008, Bioinform..

[3]  D. Louis,et al.  Fibromyalgia and myofascial pain syndromes and the workers' compensation environment: an update. , 2006, Clinics in occupational and environmental medicine.

[4]  Thomas M. Aune,et al.  Prediction of Disease Severity in Patients with Early Rheumatoid Arthritis by Gene Expression Profiling , 2009, Human genomics and proteomics : HGP.

[5]  Brian Everitt,et al.  Cluster analysis , 1974 .

[6]  M. Schuemie,et al.  Anni 2.0: a multipurpose text-mining tool for the life sciences , 2008, Genome Biology.

[7]  Thomas Werner,et al.  LitMiner and WikiGene: identifying problem-related key players of gene regulation using publication abstracts , 2005, Nucleic Acids Res..

[8]  Debra A Swoboda Negotiating the diagnostic uncertainty of contested illnesses: physician practices and paradigms , 2008, Health.

[9]  Khaled M. Hammouda Data Mining Using Conceptual Clustering , 2022 .

[10]  David S. Wishart,et al.  Nucleic Acids Research Polysearch: a Web-based Text Mining System for Extracting Relationships between Human Diseases, Genes, Mutations, Drugs Polysearch: a Web-based Text Mining System for Extracting Relationships between Human Diseases, Genes, Mutations, Drugs and Metabolites , 2008 .

[11]  Simon M. Lin,et al.  MedlineR: an open source library in R for Medline literature data mining , 2004, Bioinform..

[12]  Jason W Beckstead,et al.  Using Hierarchical Cluster Analysis in Nursing Research , 2002, Western journal of nursing research.

[13]  Dieter Rosenbaum,et al.  Cluster analysis to classify gait alterations in rheumatoid arthritis using peak pressure curves , 2006 .

[14]  George Hripcsak,et al.  Automated acquisition of disease drug knowledge from biomedical and clinical documents: an initial study. , 2008, Journal of the American Medical Informatics Association : JAMIA.

[15]  Dietrich Rebholz-Schuhmann,et al.  EBIMed - text crunching to gather facts for proteins from Medline , 2007, Bioinform..

[16]  William R. Hersh,et al.  A Survey of Current Work in Biomedical Text Mining , 2005 .

[17]  T. Podolecki,et al.  Fibromyalgia: pathogenetic, diagnostic and therapeutic concerns. , 2009, Polskie Archiwum Medycyny Wewnetrznej.

[18]  D Coggon,et al.  Generalized osteoarthritis in women: pattern of joint involvement and approaches to definition for epidemiological studies. , 1996, The Journal of rheumatology.

[19]  Martin Krallinger,et al.  Analysis of biological processes and diseases using text mining approaches. , 2010, Methods in molecular biology.

[20]  P. Sopp Cluster analysis. , 1996, Veterinary immunology and immunopathology.

[21]  John H Stone,et al.  Classification and diagnostic criteria in systemic vasculitis. , 2005, Best practice & research. Clinical rheumatology.