Multiresolution Analysis of DNA Sequences

A wavelet based method for transforming DNA sequences is illustrated by using the small subunit of the ribosome. This paper discusses the application of multi resolution analysis on FASTA-formatted DNA sequences using biorthogonal wavelets. Once transformed, the data could be used for pairwise or multiple sequence alignments needed for studies of evolutionary relationships or for gene finding. Further studies of wavelet based methods are also mentioned.

[1]  B. Rannala,et al.  Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference , 1996, Journal of Molecular Evolution.

[2]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[3]  M. Nei,et al.  A Simple Method for Estimating and Testing Minimum-Evolution Trees , 1992 .

[4]  Zhen Xiao,et al.  Multi-scaling function interpolation and approximation , 1997 .

[5]  J. Felsenstein Evolutionary trees from DNA sequences: A maximum likelihood approach , 2005, Journal of Molecular Evolution.

[6]  Wen-Hsiung Li Unbiased estimation of the rates of synonymous and nonsynonymous substitution , 2006, Journal of Molecular Evolution.

[7]  D. Lipman,et al.  Improved tools for biological sequence comparison. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[8]  S. B. Needleman,et al.  A general method applicable to the search for similarities in the amino acid sequence of two proteins. , 1970, Journal of molecular biology.

[9]  J. Davies,et al.  Molecular Biology of the Cell , 1983, Bristol Medico-Chirurgical Journal.

[10]  R F Doolittle,et al.  Searching through sequence databases. , 1990, Methods in enzymology.

[11]  Pietro Liò,et al.  Wavelets in bioinformatics and computational biology: state of art and perspectives , 2003, Bioinform..

[12]  H. Arnstein The molecular biology of the cell : B. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts and J.D. Watson Garland Publishing; New York, London, 1983 xxxix + 1181 pages. $33.95 (hardback); $27.00, £14.95 (paperback, only in Europe) , 1986 .