Genome-wide identification of AGO18b-bound miRNAs and phasiRNAs in maize by cRIP-seq

[1]  Jernej Ule,et al.  Advances in CLIP Technologies for Studies of Protein-RNA Interactions. , 2018, Molecular cell.

[2]  Lihong Zhai,et al.  AGO18b negatively regulates determinacy of spikelet meristems on the tassel central spike in maize. , 2018, Journal of integrative plant biology.

[3]  A. Carlsbecker,et al.  Class III HD-ZIPs govern vascular cell fate: an HD view on patterning and differentiation. , 2017, Journal of experimental botany.

[4]  B. Meyers,et al.  Dynamic changes of small RNAs in rice spikelet development reveal specialized reproductive phasiRNA pathways , 2016, Journal of experimental botany.

[5]  M. Heisler,et al.  Regulation of MIR165/166 by class II and class III homeodomain leucine zipper proteins establishes leaf polarity , 2016, Proceedings of the National Academy of Sciences.

[6]  Hailong Yang,et al.  Identification and functional characterization of the AGO1 ortholog in maize , 2016, Journal of integrative plant biology.

[7]  V. Walbot,et al.  Evolution, functions, and mysteries of plant ARGONAUTE proteins. , 2015, Current opinion in plant biology.

[8]  R. Varshney,et al.  High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea. , 2015, Plant science : an international journal of experimental plant biology.

[9]  Xiuren Zhang,et al.  Spatiotemporal sequestration of miR165/166 by Arabidopsis Argonaute10 promotes shoot apical meristem maintenance. , 2015, Cell reports.

[10]  V. Walbot,et al.  Spatiotemporally dynamic, cell-type–dependent premeiotic and meiotic phasiRNAs in maize anthers , 2015, Proceedings of the National Academy of Sciences.

[11]  Ke Zhang,et al.  Identification and characterization of Argonaute gene family and meiosis-enriched Argonaute during sporogenesis in maize. , 2014, Journal of integrative plant biology.

[12]  J. Micol,et al.  AGO1 controls arabidopsis inflorescence architecture possibly by regulating TFL1 expression. , 2014, Annals of botany.

[13]  Toshiaki Watanabe,et al.  Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs. , 2014, The Plant journal : for cell and molecular biology.

[14]  Tao Lu,et al.  Identification of RNA silencing components in soybean and sorghum , 2014, BMC Bioinformatics.

[15]  G. Meister Argonaute proteins: functional insights and emerging roles , 2013, Nature Reviews Genetics.

[16]  J. Zhai,et al.  Biogenesis and function of rice small RNAs from non-coding RNA precursors. , 2013, Current opinion in plant biology.

[17]  Cole Trapnell,et al.  TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions , 2013, Genome Biology.

[18]  Xiuren Zhang,et al.  Argonautes compete for miR165/166 to regulate shoot apical meristem development. , 2012, Current opinion in plant biology.

[19]  M. Siomi,et al.  Biology of PIWI-interacting RNAs: new insights into biogenesis and function inside and outside of germlines. , 2012, Genes & development.

[20]  Josh T. Cuperus,et al.  Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants[W][OA] , 2012, Plant Cell.

[21]  Lijia Ma,et al.  Roles of DCL4 and DCL3b in rice phased small RNA biogenesis. , 2012, The Plant journal : for cell and molecular biology.

[22]  M. Schmid,et al.  The control of developmental phase transitions in plants , 2011, Development.

[23]  Patrick Xuechun Zhao,et al.  psRNATarget: a plant small RNA target analysis server , 2011, Nucleic Acids Res..

[24]  Hongliang Zhu,et al.  Arabidopsis Argonaute10 Specifically Sequesters miR166/165 to Regulate Shoot Apical Meristem Development , 2011, Cell.

[25]  M. Schmid,et al.  Regulation of flowering time: all roads lead to Rome , 2011, Cellular and Molecular Life Sciences.

[26]  Xuemei Chen,et al.  ARGONAUTE10 and ARGONAUTE1 Regulate the Termination of Floral Stem Cells through Two MicroRNAs in Arabidopsis , 2011, PLoS genetics.

[27]  E. Izaurralde,et al.  Gene silencing by microRNAs: contributions of translational repression and mRNA decay , 2011, Nature Reviews Genetics.

[28]  Manjit Singh,et al.  Production of Viable Gametes without Meiosis in Maize Deficient for an ARGONAUTE Protein[W] , 2011, Plant Cell.

[29]  H. Vaucheret,et al.  Form, Function, and Regulation of ARGONAUTE Proteins , 2010, Plant Cell.

[30]  Qian Qian,et al.  Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice , 2010, Nature Genetics.

[31]  Makoto Matsuoka,et al.  OsSPL14 promotes panicle branching and higher grain productivity in rice , 2010, Nature Genetics.

[32]  R. Martienssen,et al.  Control of female gamete formation by a small RNA pathway in Arabidopsis , 2010, Nature.

[33]  Y. Qi,et al.  Rice MicroRNA Effector Complexes and Targets[C][W] , 2009, The Plant Cell Online.

[34]  Detlef Weigel,et al.  The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis , 2009, Cell.

[35]  Cameron Johnson,et al.  Clusters and superclusters of phased small RNAs in the developing inflorescence of rice. , 2009, Genome research.

[36]  Stefano Torti,et al.  From decision to commitment: the molecular memory of flowering. , 2009, Molecular plant.

[37]  A. Mele,et al.  Ago HITS-CLIP decodes miRNA-mRNA interaction maps , 2009, Nature.

[38]  Hai Huang,et al.  The ARGONAUTE10 gene modulates shoot apical meristem maintenance and establishment of leaf polarity by repressing miR165/166 in Arabidopsis. , 2009, The Plant journal : for cell and molecular biology.

[39]  Cole Trapnell,et al.  Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.

[40]  Jitendra P Khurana,et al.  Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice , 2008, BMC Genomics.

[41]  Gregory J. Hannon,et al.  Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide , 2008, Cell.

[42]  H. Vaucheret,et al.  Plant ARGONAUTES. , 2008, Trends in plant science.

[43]  Sarah Hake,et al.  The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA , 2007, Nature Genetics.

[44]  Jae-Hoon Jung,et al.  MIR166/165 genes exhibit dynamic expression patterns in regulating shoot apical meristem and floral development in Arabidopsis , 2007, Planta.

[45]  D. Cosgrove Growth of the plant cell wall , 2005, Nature Reviews Molecular Cell Biology.

[46]  P. Springer,et al.  Architecture of floral branch systems in maize and related grasses , 2005, Nature.

[47]  Xuemei Chen,et al.  A MicroRNA as a Translational Repressor of APETALA2 in Arabidopsis Flower Development , 2004, Science.

[48]  C. Kidner,et al.  Spatially restricted microRNA directs leaf polarity through ARGONAUTE1 , 2004, Nature.

[49]  Hajime Sakai,et al.  Regulation of Flowering Time and Floral Organ Identity by a MicroRNA and Its APETALA2-Like Target Genes Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.016238. , 2003, The Plant Cell Online.

[50]  Hilde van der Togt,et al.  Publisher's Note , 2003, J. Netw. Comput. Appl..

[51]  M. Matsuoka,et al.  OsPNH1 regulates leaf development and maintenance of the shoot apical meristem in rice. , 2002, The Plant journal : for cell and molecular biology.

[52]  P. Masson,et al.  The PINHEAD/ZWILLE gene acts pleiotropically in Arabidopsis development and has overlapping functions with the ARGONAUTE1 gene. , 1999, Development.

[53]  G. Jürgens,et al.  Role of the ZWILLE gene in the regulation of central shoot meristem cell fate during Arabidopsis embryogenesis , 1998, The EMBO journal.

[54]  M. Van Montagu,et al.  Control of Arabidopsis flower and seed development by the homeotic gene APETALA2. , 1994, The Plant cell.

[55]  S. Hake,et al.  Maize Floral Development: New Genes and Old Mutants. , 1993, The Plant cell.

[56]  S. Shannon,et al.  Genetic Interactions That Regulate Inflorescence Development in Arabidopsis. , 1993, The Plant cell.