Mini-review: In vitro Metabolic Engineering for Biomanufacturing of High-value Products
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[1] Christoph Hold,et al. Forward design of a complex enzyme cascade reaction , 2016, Nature Communications.
[2] T. Erb,et al. A synthetic pathway for the fixation of carbon dioxide in vitro , 2016, Science.
[3] Michael C Jewett,et al. Cell-Free Mixing of Escherichia coli Crude Extracts to Prototype and Rationally Engineer High-Titer Mevalonate Synthesis. , 2016, ACS synthetic biology.
[4] Jeffrey D. Varner,et al. Dynamic Modeling of Cell-Free Biochemical Networks Using Effective Kinetic Models , 2015 .
[5] Michael C Jewett,et al. An integrated cell-free metabolic platform for protein production and synthetic biology , 2008, Molecular systems biology.
[6] Huimin Zhao,et al. Engineering microbial factories for synthesis of value-added products , 2011, Journal of Industrial Microbiology & Biotechnology.
[7] Kenji Okano,et al. In vitro production of n-butanol from glucose. , 2013, Metabolic engineering.
[8] James C. Liao,et al. Stability of Ensemble Models Predicts Productivity of Enzymatic Systems , 2016, PLoS Comput. Biol..
[9] Ahmet Ay,et al. Mathematical modeling of gene expression: a guide for the perplexed biologist , 2011, Critical reviews in biochemistry and molecular biology.
[10] A. Piruska,et al. Enhanced transcription rates in membrane-free protocells formed by coacervation of cell lysate , 2013, Proceedings of the National Academy of Sciences.
[11] M. Jewett,et al. Cell-free synthetic biology: thinking outside the cell. , 2012, Metabolic engineering.
[12] Vincent Noireaux,et al. A cost-effective polyphosphate-based metabolism fuels an all E. coli cell-free expression system. , 2015, Metabolic engineering.
[13] E. Andrianantoandro,et al. Synthetic biology: new engineering rules for an emerging discipline , 2006, Molecular systems biology.
[14] L. Scott,et al. Pathway engineered enzymatic de novo purine nucleotide synthesis. , 2008, ACS chemical biology.
[15] Dong-Myung Kim,et al. Regeneration of adenosine triphosphate from glycolytic intermediates for cell-free protein synthesis. , 2001, Biotechnology and bioengineering.
[16] R. Iniesta,et al. Machine learning, statistical learning and the future of biological research in psychiatry , 2016, Psychological Medicine.
[17] C Giersch. Mathematical modelling of metabolism. , 2000, Current opinion in plant biology.
[18] The phytoalexin camalexin mediates cytotoxicity towards aggressive prostate cancer cells via reactive oxygen species , 2013, Journal of Natural Medicines.
[19] B. B. Mishra,et al. Natural products: an evolving role in future drug discovery. , 2011, European journal of medicinal chemistry.
[20] Fabio Mavelli,et al. A Simple Protein Synthesis Model for the PURE System Operation , 2015, Bulletin of mathematical biology.
[21] Michael C. Jewett,et al. High-throughput preparation methods of crude extract for robust cell-free protein synthesis , 2015, Scientific Reports.
[22] James C Liao,et al. Ensemble modeling for strain development of L-lysine-producing Escherichia coli. , 2009, Metabolic engineering.
[23] C. Wittmann,et al. Bio-based production of chemicals, materials and fuels -Corynebacterium glutamicum as versatile cell factory. , 2012, Current opinion in biotechnology.
[24] Y.‐H.P. Zhang. Reviving the carbohydrate economy via multi-product lignocellulose biorefineries , 2008, Journal of Industrial Microbiology & Biotechnology.
[25] Charles E. Wyman,et al. BIOMASS ETHANOL: Technical Progress, Opportunities, and Commercial Challenges , 1999 .
[26] John R. Anderson,et al. MACHINE LEARNING An Artificial Intelligence Approach , 2009 .
[27] James U Bowie,et al. A synthetic biochemistry module for production of bio-based chemicals from glucose. , 2016, Nature chemical biology.
[28] Michael Margaliot,et al. Ribosome flow model with positive feedback , 2013, Journal of The Royal Society Interface.
[29] Martin Fussenegger,et al. Engineering synergy in biotechnology. , 2014, Nature chemical biology.
[30] James C Liao,et al. Ensemble Modeling for Robustness Analysis in engineering non-native metabolic pathways. , 2014, Metabolic engineering.
[31] A.P.F. Atman,et al. Hybrid agent-based model for quantitative in-silico cell-free protein synthesis , 2016, Biosyst..
[32] Andrew Buchanan,et al. Coping with complexity: Machine learning optimization of cell‐free protein synthesis , 2011, Biotechnology and Bioengineering.
[33] V. Hatzimanikatis,et al. A model for protein translation: polysome self-organization leads to maximum protein synthesis rates. , 2007, Biophysical journal.
[34] Timothy S. Ham,et al. Production of the antimalarial drug precursor artemisinic acid in engineered yeast , 2006, Nature.
[35] Joseph A. Rollin,et al. High-yield hydrogen production from biomass by in vitro metabolic engineering: Mixed sugars coutilization and kinetic modeling , 2015, Proceedings of the National Academy of Sciences.
[36] Y.‐H.P. Zhang,et al. Production of biocommodities and bioelectricity by cell-free synthetic enzymatic pathway biotransformations: challenges and opportunities. , 2010, Biotechnology and bioengineering.
[37] J. Liao,et al. Ensemble Modeling for Aromatic Production in Escherichia coli , 2009, PloS one.
[38] Cem Albayrak,et al. Cell-free co-production of an orthogonal transfer RNA activates efficient site-specific non-natural amino acid incorporation , 2013, Nucleic acids research.
[39] Vincent Noireaux,et al. Synthesis of 2.3 mg/ml of protein with an all Escherichia coli cell-free transcription-translation system. , 2014, Biochimie.
[40] Jeffrey D Orth,et al. What is flux balance analysis? , 2010, Nature Biotechnology.
[41] A. Burgard,et al. Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol. , 2011, Nature chemical biology.
[42] J. Swartz,et al. Energizing cell-free protein synthesis with glucose metabolism. , 2005, Biotechnology and bioengineering.
[43] J. Liao,et al. Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels , 2008, Nature.
[44] Cheemeng Tan,et al. Synthetic Biology Outside the Cell: Linking Computational Tools to Cell-Free Systems , 2014, Front. Bioeng. Biotechnol..
[45] Ryan A McClure,et al. In Vitro Reconstruction of Nonribosomal Peptide Biosynthesis Directly from DNA Using Cell-Free Protein Synthesis. , 2017, ACS synthetic biology.
[46] J. Gershenzon,et al. Constitutive plant toxins and their role in defense against herbivores and pathogens. , 2002, Current opinion in plant biology.
[47] Marshall W. Nirenberg,et al. The dependence of cell-free protein synthesis in E. coli upon naturally occurring or synthetic polyribonucleotides , 1961, Proceedings of the National Academy of Sciences.
[48] Dong-Myung Kim,et al. Prolonging cell-free protein synthesis with a novel ATP regeneration system. , 1999, Biotechnology and bioengineering.
[49] Tiangang Liu,et al. In vitro reconstitution and steady-state analysis of the fatty acid synthase from Escherichia coli , 2011, Proceedings of the National Academy of Sciences.
[50] Vincent Noireaux,et al. Coarse-grained dynamics of protein synthesis in a cell-free system. , 2011, Physical review letters.
[51] Y. Jang,et al. Metabolic engineering of Clostridium acetobutylicum M 5 for highly selective butanol production , 2009 .
[52] Tiangang Liu,et al. In vitro reconstitution of mevalonate pathway and targeted engineering of farnesene overproduction in Escherichia coli , 2014, Biotechnology and bioengineering.
[53] J. Swartz,et al. An Economical Method for Cell‐Free Protein Synthesis using Glucose and Nucleoside Monophosphates , 2008, Biotechnology progress.
[54] C. Khosla,et al. Quantitative analysis and engineering of fatty acid biosynthesis in E. coli. , 2010, Metabolic engineering.
[55] M. Jewett,et al. Mimicking the Escherichia coli cytoplasmic environment activates long‐lived and efficient cell‐free protein synthesis , 2004, Biotechnology and bioengineering.
[56] Bradley C. Bundy,et al. Escherichia coli‐based cell‐free synthesis of virus‐like particles , 2008, Biotechnology and bioengineering.
[57] Dong-Myung Kim,et al. Prolonging Cell‐Free Protein Synthesis by Selective Reagent Additions , 2000, Biotechnology progress.
[58] J. Liao,et al. Ensemble modeling of metabolic networks. , 2008, Biophysical journal.
[59] B. Halkier,et al. Isolation and Reconstitution of Cytochrome P450ox and in Vitro Reconstitution of the Entire Biosynthetic Pathway of the Cyanogenic Glucoside Dhurrin from Sorghum , 1997, Plant physiology.
[60] Matthew K. Theisen,et al. Building carbon–carbon bonds using a biocatalytic methanol condensation cycle , 2014, Proceedings of the National Academy of Sciences.
[61] R. Kwok. Five hard truths for synthetic biology , 2010, Nature.
[62] James J. Collins,et al. Portable, On-Demand Biomolecular Manufacturing , 2016, Cell.
[63] E. Sattely,et al. Minimum set of cytochromes P450 for reconstituting the biosynthesis of camalexin, a major Arabidopsis antibiotic. , 2013, Angewandte Chemie.
[64] R. Zimmer,et al. Experiment and mathematical modeling of gene expression dynamics in a cell-free system. , 2012, Integrative biology : quantitative biosciences from nano to macro.
[65] T. Wood,et al. Hydrogen production by recombinant Escherichia coli strains , 2012, Microbial biotechnology.
[66] V. Wendisch,et al. Metabolic engineering of Escherichia coli and Corynebacterium glutamicum for biotechnological production of organic acids and amino acids. , 2006, Current opinion in microbiology.
[67] Jiong Hong,et al. Fast identification of thermostable beta‐glucosidase mutants on cellobiose by a novel combinatorial selection/screening approach , 2009, Biotechnology and bioengineering.
[68] P Sarnow,et al. Cap-dependent and cap-independent translation by internal initiation of mRNAs in cell extracts prepared from Saccharomyces cerevisiae , 1994, Molecular and cellular biology.
[69] D. Chowdhury,et al. Stochastic kinetics of ribosomes: single motor properties and collective behavior. , 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.
[70] Yit-Heng Chooi,et al. Metabolic engineering for the production of natural products. , 2011, Annual review of chemical and biomolecular engineering.
[71] Y.-H. Percival Zhang,et al. A sweet out-of-the-box solution to the hydrogen economy: is the sugar-powered car science fiction? , 2009 .
[72] Tetsuya Yomo,et al. Quantifying epistatic interactions among the components constituting the protein translation system , 2009, Molecular systems biology.
[73] Xueyang Feng,et al. OM-FBA: Integrate Transcriptomics Data with Flux Balance Analysis to Decipher the Cell Metabolism , 2016, PloS one.
[74] Vincent Noireaux,et al. Linear DNA for rapid prototyping of synthetic biological circuits in an Escherichia coli based TX-TL cell-free system. , 2014, ACS synthetic biology.
[75] Jian-Jiang Zhong,et al. Bioreactor Engineering Research and Industrial Applications I: Cell Factories , 2016 .
[76] Ashty S Karim,et al. A cell-free framework for rapid biosynthetic pathway prototyping and enzyme discovery. , 2016, Metabolic engineering.
[77] C. Walsh,et al. In Vitro Reconstitution of Metabolic Pathways: Insights into Nature’s Chemical Logic , 2015, Synlett.
[78] P. Winters,et al. Perspective on opportunities in industrial biotechnology in renewable chemicals , 2012, Biotechnology journal.
[79] Ashty S. Karim,et al. Cell‐free metabolic engineering: Biomanufacturing beyond the cell , 2015, Biotechnology journal.
[80] Antonios Armaou,et al. A Computational Procedure for Optimal Engineering Interventions Using Kinetic Models of Metabolism , 2006, Biotechnology progress.
[81] C. J. Murray,et al. Microscale to Manufacturing Scale-up of Cell-Free Cytokine Production—A New Approach for Shortening Protein Production Development Timelines , 2011, Biotechnology and bioengineering.
[82] Y. Zhang,et al. Production of biofuels and biochemicals by in vitro synthetic biosystems: Opportunities and challenges. , 2015, Biotechnology advances.