Unique Spectrum of Activity of Prosimian TRIM5α against Exogenous and Endogenous Retroviruses

ABSTRACT Lentiviruses, the genus of retrovirus that includes HIV-1, rarely endogenize. Some lemurs uniquely possess an endogenous lentivirus called PSIV (“prosimian immunodeficiency virus”). Thus, lemurs provide the opportunity to study the activity of host defense factors, such as TRIM5α, in the setting of germ line invasion. We characterized the activities of TRIM5α proteins from two distant lemurs against exogenous retroviruses and a chimeric PSIV. TRIM5α from gray mouse lemur, which carries PSIV in its genome, exhibited the narrowest restriction activity. One allelic variant of gray mouse lemur TRIM5α restricted only N-tropic murine leukemia virus (N-MLV), while a second variant restricted N-MLV and, uniquely, B-tropic MLV (B-MLV); both variants poorly blocked PSIV. In contrast, TRIM5α from ring-tailed lemur, which does not contain PSIV in its genome, revealed one of the broadest antiviral activities reported to date against lentiviruses, including PSIV. Investigation into the antiviral specificity of ring-tailed lemur TRIM5α demonstrated a major contribution of a 32-amino-acid expansion in variable region 2 (v2) of the B30.2/SPRY domain to the breadth of restriction. Data on lemur TRIM5α and the prediction of ancestral simian sequences hint at an evolutionary scenario where antiretroviral specificity is prominently defined by the lineage-specific expansion of the variable loops of B30.2/SPRY.

[1]  L. T. Nash,et al.  The Evolution of Exudativory in Primates , 2011, Folia Primatologica.

[2]  W. Taylor,et al.  Structural and functional analysis of prehistoric lentiviruses uncovers an ancient molecular interface. , 2010, Cell host & microbe.

[3]  Ruchi M. Newman,et al.  TRIM5 Suppresses Cross-Species Transmission of a Primate Immunodeficiency Virus and Selects for Emergence of Resistant Variants in the New Species , 2010, PLoS biology.

[4]  M. Grütter,et al.  Generation of human TRIM5α mutants with high HIV-1 restriction activity , 2010, Gene Therapy.

[5]  D. Trono,et al.  The Specificity of TRIM5α-Mediated Restriction Is Influenced by Its Coiled-Coil Domain , 2010, Journal of Virology.

[6]  J. Sodroski,et al.  Species-Specific Inhibition of Foamy Viruses from South American Monkeys by New World Monkey TRIM5α Proteins , 2010, Journal of Virology.

[7]  M. Emerman,et al.  Paleovirology—Modern Consequences of Ancient Viruses , 2010, PLoS biology.

[8]  J. Sodroski,et al.  TRIM5α Modulates Immunodeficiency Virus Control in Rhesus Monkeys , 2010, PLoS pathogens.

[9]  Baris E. Suzek,et al.  The Universal Protein Resource (UniProt) in 2010 , 2009, Nucleic Acids Res..

[10]  María Martín,et al.  The Universal Protein Resource (UniProt) in 2010 , 2010 .

[11]  Seasonality in gum and honeydew feeding in gray mouse lemurs , 2010 .

[12]  N. Guex,et al.  Evolutionary trajectories of primate genes involved in HIV pathogenesis. , 2009, Molecular biology and evolution.

[13]  M. Grütter,et al.  The crystal structure of human pyrin b30.2 domain: implications for mutations associated with familial Mediterranean fever. , 2009, Journal of molecular biology.

[14]  J. Sodroski,et al.  A B-Box 2 Surface Patch Important for TRIM5α Self-Association, Capsid Binding Avidity, and Retrovirus Restriction , 2009, Journal of Virology.

[15]  T. Schaller,et al.  Truncation of TRIM5 in the Feliformia Explains the Absence of Retroviral Restriction in Cells of the Domestic Cat , 2009, Journal of Virology.

[16]  A. Bergamaschi,et al.  Human TRIM Gene Expression in Response to Interferons , 2009, PloS one.

[17]  M. Emerman,et al.  An expanded clade of rodent Trim5 genes. , 2009, Virology.

[18]  C. Feschotte,et al.  Parallel Germline Infiltration of a Lentivirus in Two Malagasy Lemurs , 2009, PLoS genetics.

[19]  A. Katzourakis,et al.  Identification of a RELIK orthologue in the European hare (Lepus europaeus) reveals a minimum age of 12 million years for the lagomorph lentiviruses. , 2009, Virology.

[20]  R. Shafer,et al.  A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution , 2008, Proceedings of the National Academy of Sciences.

[21]  M. Emerman,et al.  Identification of Postentry Restrictions to Mason-Pfizer Monkey Virus Infection in New World Monkey Cells , 2008, Journal of Virology.

[22]  J. Sodroski,et al.  A human TRIM5alpha B30.2/SPRY domain mutant gains the ability to restrict and prematurely uncoat B-tropic murine leukemia virus. , 2008, Virology.

[23]  S. Nisole,et al.  Implication of TRIMalpha and TRIMCyp in interferon-induced anti-retroviral restriction activities , 2008, Retrovirology.

[24]  L. James,et al.  TRIM21 is an IgG receptor that is structurally, thermodynamically, and kinetically conserved , 2008, Proceedings of the National Academy of Sciences.

[25]  P. Bieniasz,et al.  Primate Lentivirus Capsid Sensitivity to TRIM5 Proteins , 2008, Journal of Virology.

[26]  H. Hanenberg,et al.  Restriction of Foamy Viruses by Primate Trim5α , 2008, Journal of Virology.

[27]  A. Telenti,et al.  Antiretroviral Activity of Ancestral TRIM5α , 2007, Journal of Virology.

[28]  Michael Emerman,et al.  Discordant Evolution of the Adjacent Antiretroviral Genes TRIM22 and TRIM5 in Mammals , 2007, PLoS pathogens.

[29]  D. Trono,et al.  Interfering Residues Narrow the Spectrum of MLV Restriction by Human TRIM5α , 2007, PLoS pathogens.

[30]  J. Sodroski,et al.  Functional interplay between the B-box 2 and the B30.2(SPRY) domains of TRIM5alpha. , 2007, Virology.

[31]  Y. Ikeda,et al.  Alpha Interferon Enhances TRIM5α-Mediated Antiviral Activities in Human and Rhesus Monkey Cells , 2007, Journal of Virology.

[32]  J. Trowsdale,et al.  Structural basis for PRYSPRY-mediated tripartite motif (TRIM) protein function , 2007, Proceedings of the National Academy of Sciences.

[33]  O. Pybus,et al.  Discovery and analysis of the first endogenous lentivirus , 2007, Proceedings of the National Academy of Sciences.

[34]  H. Willard,et al.  Primate comparative genomics: lemur biology and evolution. , 2007, Trends in genetics : TIG.

[35]  C. Blair,et al.  ASSESSING FLAVIVIRUS, LENTIVIRUS, AND HERPESVIRUS EXPOSURE IN FREE-RANGING RING-TAILED LEMURS IN SOUTHWESTERN MADAGASCAR , 2007, Journal of wildlife diseases.

[36]  Ruchi M. Newman,et al.  Balancing selection and the evolution of functional polymorphism in Old World monkey TRIM5α , 2006, Proceedings of the National Academy of Sciences.

[37]  M. Yap,et al.  All Three Variable Regions of the TRIM5α B30.2 Domain Can Contribute to the Specificity of Retrovirus Restriction , 2006, Journal of Virology.

[38]  Timothy P. L. Smith,et al.  Isolation of an Active Lv1 Gene from Cattle Indicates that Tripartite Motif Protein-Mediated Innate Immunity to Retroviral Infection Is Widespread among Mammals , 2006, Journal of Virology.

[39]  A. Engelman,et al.  Evolution of a cytoplasmic tripartite motif (TRIM) protein in cows that restricts retroviral infection. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[40]  Joseph Sodroski,et al.  Specific recognition and accelerated uncoating of retroviral capsids by the TRIM5alpha restriction factor. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[41]  L. Gould,et al.  Lemurs : ecology and adaptation , 2006 .

[42]  U. Radespiel Ecological Diversity and Seasonal Adaptations of Mouse Lemurs (Microcebus spp.) , 2006 .

[43]  A. Telenti,et al.  Patterns of evolution of host proteins involved in retroviral pathogenesis , 2006, Retrovirology.

[44]  K. Horie-Inoue,et al.  A retrovirus restriction factor TRIM5alpha is transcriptionally regulated by interferons. , 2005, Biochemical and biophysical research communications.

[45]  J. Olsen,et al.  Restriction of Feline Immunodeficiency Virus by Ref1, Lv1, and Primate TRIM5α Proteins , 2005, Journal of Virology.

[46]  B. Su,et al.  Adaptive evolution of primate TRIM5α, a gene restricting HIV-1 infection ☆ , 2005 .

[47]  J. Sodroski,et al.  Retroviral Restriction Factor TRIM5α Is a Trimer , 2005, Journal of Virology.

[48]  G. Towers,et al.  Differential Restriction of Human Immunodeficiency Virus Type 2 and Simian Immunodeficiency Virus SIVmac by TRIM5α Alleles , 2005, Journal of Virology.

[49]  J. Sodroski,et al.  The Contribution of RING and B-box 2 Domains to Retroviral Restriction Mediated by Monkey TRIM5α* , 2005, Journal of Biological Chemistry.

[50]  A. Yang,et al.  Human Tripartite Motif 5α Domains Responsible for Retrovirus Restriction Activity and Specificity , 2005, Journal of Virology.

[51]  J. Sodroski,et al.  The B30.2(SPRY) Domain of the Retroviral Restriction Factor TRIM5α Exhibits Lineage-Specific Length and Sequence Variation in Primates , 2005, Journal of Virology.

[52]  J. Sodroski,et al.  Retrovirus Restriction by TRIM5α Variants from Old World and New World Primates , 2005, Journal of Virology.

[53]  J. Sodroski,et al.  Species-Specific Variation in the B30.2(SPRY) Domain of TRIM5α Determines the Potency of Human Immunodeficiency Virus Restriction , 2005, Journal of Virology.

[54]  Michael Emerman,et al.  Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[55]  Jonathan P. Stoye,et al.  A Single Amino Acid Change in the SPRY Domain of Human Trim5α Leads to HIV-1 Restriction , 2005, Current Biology.

[56]  B. Su,et al.  Adaptive evolution of primate TRIM5alpha, a gene restricting HIV-1 infection. , 2005, Gene.

[57]  J. Sodroski,et al.  Retroviral restriction factor TRIM5alpha is a trimer. , 2005, Journal of virology.

[58]  J. Sodroski,et al.  Retrovirus restriction by TRIM5alpha variants from Old World and New World primates. , 2005, Journal of virology.

[59]  Conrad C. Huang,et al.  UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..

[60]  Robert C. Edgar,et al.  MUSCLE: a multiple sequence alignment method with reduced time and space complexity , 2004, BMC Bioinformatics.

[61]  J. Sodroski,et al.  TRIM5alpha mediates the postentry block to N-tropic murine leukemia viruses in human cells. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[62]  S. Nisole,et al.  Trim5α protein restricts both HIV-1 and murine leukemia virus , 2004 .

[63]  G. Towers,et al.  The human and African green monkey TRIM5alpha genes encode Ref1 and Lv1 retroviral restriction factor activities. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[64]  A. Yang,et al.  Retrovirus resistance factors Ref1 and Lv1 are species-specific variants of TRIM5alpha. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[65]  Joseph W. Thornton,et al.  Resurrecting ancient genes: experimental analysis of extinct molecules , 2004, Nature Reviews Genetics.

[66]  Robert C. Edgar,et al.  MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.

[67]  C. M. Owens,et al.  The cytoplasmic body component TRIM5α restricts HIV-1 infection in Old World monkeys , 2004, Nature.

[68]  S. Nisole,et al.  Trim5alpha protein restricts both HIV-1 and murine leukemia virus. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[69]  Alessandro Guffanti,et al.  The tripartite motif family identifies cell compartments , 2001, The EMBO journal.

[70]  Liam J. McGuffin,et al.  The PSIPRED protein structure prediction server , 2000, Bioinform..

[71]  T. N. Bhat,et al.  The Protein Data Bank , 2000, Nucleic Acids Res..

[72]  R. Mittermeier,et al.  Lemurs of Madagascar , 1994 .

[73]  T. Blundell,et al.  Comparative protein modelling by satisfaction of spatial restraints. , 1993, Journal of molecular biology.