Zinc binding to a regulatory zinc-sensing domain monitored in vivo by using FRET.

We have generated probes of metal binding to zinc fingers (ZFs) that provide tools to study zinc trafficking in vivo. In this study, we used these probes to examine zinc binding by the Zap1 transcription factor of Saccharomyces cerevisiae. Zap1 contains two zinc-regulated activation domains (ADs), AD1 and AD2. AD2 is located within two C2H2 ZFs, ZF1 and ZF2. Studies have indicated that apoAD2 activates transcription and zinc binding to ZF1 and that ZF2 forms an interacting-finger-pair structure that is necessary to inhibit AD function. A related structural finger pair, ZF3 and ZF4, is found in the Zap1 DNA binding domain. In vitro studies indicated that, although the ZF1/2 and ZF3/4 finger pairs bind zinc with similar affinities, zinc that was bound to ZF1/2 was much more labile. We examined the properties of Zap1 ZFs in vivo by FRET. ZF pairs were flanked by enhanced yellow fluorescent protein and enhanced cyan fluorescent protein, allowing detection of zinc-induced conformation changes by FRET. By using these reporters, we found that ZF1/2 and ZF3/4 showed similar responses to zinc under steady-state conditions in vivo. In contrast, ZF1/2 zinc binding was significantly more labile than was ZF3/4. Also, ZF1/2 accumulated in an apo form that could rapidly bind zinc, whereas the ZF3/4 pair did not. Last, we show that these properties are evolutionarily conserved indicating their importance to Zap1 function. These results indicate that the kinetic lability of ZF1/2 in vivo is a key component of Zap1 zinc responsiveness.

[1]  J. Berg,et al.  Lessons from zinc-binding peptides. , 1997, Annual review of biophysics and biomolecular structure.

[2]  A. Kanai,et al.  Role of metallothionein in nitric oxide signaling as revealed by a green fluorescent fusion protein. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[3]  J. V. Moran,et al.  Initial sequencing and analysis of the human genome. , 2001, Nature.

[4]  I. Reynolds,et al.  A reevaluation of neuronal zinc measurements: artifacts associated with high intracellular dye concentration. , 2002, Molecular Pharmacology.

[5]  J. Berg,et al.  A Fluorescent Zinc Probe Based on Metal-Induced Peptide Folding , 1996 .

[6]  D. Eide,et al.  Zinc-induced Inactivation of the Yeast ZRT1 Zinc Transporter Occurs through Endocytosis and Vacuolar Degradation* , 1998, The Journal of Biological Chemistry.

[7]  R. Tsien,et al.  Fluorescent indicators for Ca2+based on green fluorescent proteins and calmodulin , 1997, Nature.

[8]  D. Eide,et al.  The yeast ZRT1 gene encodes the zinc transporter protein of a high-affinity uptake system induced by zinc limitation. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[9]  J. Laity,et al.  Solution structure of a Zap1 zinc-responsive domain provides insights into metalloregulatory transcriptional repression in Saccharomyces cerevisiae. , 2006, Journal of molecular biology.

[10]  H. Takeuchi,et al.  Role of metal-ligand coordination in the folding pathway of zinc finger peptides. , 1998, Biochimica et biophysica acta.

[11]  D. Eide,et al.  Induction of the ZRC1 Metal Tolerance Gene in Zinc-limited Yeast Confers Resistance to Zinc Shock* , 2003, The Journal of Biological Chemistry.

[12]  D. Winge,et al.  A dual role for zinc fingers in both DNA binding and zinc sensing by the Zap1 transcriptional activator , 2000, The EMBO journal.

[13]  C. Pabo,et al.  Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers. , 1993, Science.

[14]  D. Eide,et al.  Regulation of Zinc Homeostasis in Yeast by Binding of the ZAP1 Transcriptional Activator to Zinc-responsive Promoter Elements* , 1998, The Journal of Biological Chemistry.

[15]  Raymond S Brown,et al.  Zinc finger proteins: getting a grip on RNA. , 2005, Current opinion in structural biology.

[16]  L. Guarente Yeast promoters and lacZ fusions designed to study expression of cloned genes in yeast. , 1983, Methods in enzymology.

[17]  W. Frommer,et al.  NTR1 encodes a high affinity oligopeptide transporter in Arabidopsis , 1995, FEBS letters.

[18]  D. Eide,et al.  Zinc transporters that regulate vacuolar zinc storage in Saccharomyces cerevisiae , 2000, The EMBO journal.

[19]  J. Berg,et al.  Kinetics of metal binding by a zinc finger peptide , 2000 .

[20]  D. Botstein,et al.  Plasmid construction by homologous recombination in yeast. , 1987, Gene.

[21]  D. Giedroc,et al.  Conformational Heterogeneity in the C-terminal Zinc Fingers of Human MTF-1 , 2001, The Journal of Biological Chemistry.

[22]  D. Winge,et al.  Zap1 activation domain 1 and its role in controlling gene expression in response to cellular zinc status , 2005, Molecular microbiology.

[23]  R. Tsien,et al.  Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein , 2004, Nature Biotechnology.

[24]  D. Botstein,et al.  Genome-wide characterization of the Zap1p zinc-responsive regulon in yeast. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[25]  W. Maret,et al.  Domain-specific fluorescence resonance energy transfer (FRET) sensors of metallothionein/thionein. , 2005, Protein engineering, design & selection : PEDS.

[26]  W. Welch,et al.  How cells respond to stress. , 1993, Scientific American.

[27]  G. Halliday,et al.  Measurement of ultraviolet radiation-induced suppression of recall contact and delayed-type hypersensitivity in humans. , 2002, Methods.

[28]  D. Winge,et al.  Mapping the DNA Binding Domain of the Zap1 Zinc-responsive Transcriptional Activator* , 2000, The Journal of Biological Chemistry.

[29]  D. Winge,et al.  Zinc fingers can act as Zn2+ sensors to regulate transcriptional activation domain function , 2003, The EMBO journal.

[30]  T. Davis,et al.  Fluorescence resonance energy transfer using color variants of green fluorescent protein. , 2002, Methods in enzymology.

[31]  Jeremy M. Berg,et al.  Thermodynamic β -sheet propensities measured using a zinc-finger host peptide , 1993, Nature.

[32]  J. Berg,et al.  Independence of metal binding between tandem Cys2His2 zinc finger domains , 1993, Protein science : a publication of the Protein Society.

[33]  J. Ladbury,et al.  Solvation and the hidden thermodynamics of a zinc finger probed by nonstandard repair of a protein crevice , 2004, Protein science : a publication of the Protein Society.

[34]  J. Mackay,et al.  Zinc fingers are sticking together. , 1998, Trends in biochemical sciences.