Expanding the taxonomic range in the fecal metagenome
暂无分享,去创建一个
[1] Ole Lund,et al. Rapid and precise alignment of raw reads against redundant databases with KMA , 2018, BMC Bioinformatics.
[2] Steven L. Salzberg,et al. Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank , 2020, Genome Biology.
[3] S. Lynch,et al. The Human Intestinal Microbiome in Health and Disease. , 2016, The New England journal of medicine.
[4] Günter Mayer,et al. Systematic evaluation of error rates and causes in short samples in next-generation sequencing , 2018, Scientific Reports.
[5] Alexandra J. Roth-Schulze,et al. Changes in the composition and function of the gut microbiome accompany type 1 diabetes in pregnancy , 2020 .
[6] O. Lund,et al. CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data , 2020, Genome Biology.
[7] Vanessa R. Marcelino,et al. CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data , 2019, Genome Biology.
[8] Florian P Breitwieser,et al. A review of methods and databases for metagenomic classification and assembly , 2019, Briefings Bioinform..
[9] Daniel H. Huson,et al. MetaSim—A Sequencing Simulator for Genomics and Metagenomics , 2008, PloS one.
[10] H. Hallen-Adams,et al. Fungi in the healthy human gastrointestinal tract , 2017, Virulence.
[11] Katherine H. Huang,et al. A framework for human microbiome research , 2012, Nature.
[12] Jennifer Lu,et al. Improved metagenomic analysis with Kraken 2 , 2019, Genome Biology.
[13] C. Huttenhower,et al. Metagenomic microbial community profiling using unique clade-specific marker genes , 2012, Nature Methods.
[14] Pardis C. Sabeti,et al. Benchmarking Metagenomics Tools for Taxonomic Classification , 2019, Cell.
[15] R. Milo,et al. Revised Estimates for the Number of Human and Bacteria Cells in the Body , 2016, bioRxiv.
[16] W. Lipkin,et al. Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis , 2015, mBio.
[17] J. Clemente,et al. The Impact of the Gut Microbiota on Human Health: An Integrative View , 2012, Cell.
[18] Brian C. Thomas,et al. Genome-reconstruction for eukaryotes from complex natural microbial communities , 2017, bioRxiv.
[19] A. Kurilshikov,et al. Studying the gut virome in the metagenomic era: challenges and perspectives , 2019, BMC Biology.
[20] R. Gibbs,et al. The gut mycobiome of the Human Microbiome Project healthy cohort , 2017, Microbiome.
[21] Steven L. Salzberg,et al. Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank , 2020, Genome Biology.
[22] Robert C. Edgar,et al. BIOINFORMATICS APPLICATIONS NOTE , 2001 .
[23] S. Salzberg,et al. Centrifuge: rapid and sensitive classification of metagenomic sequences , 2016, bioRxiv.
[24] Derrick E. Wood,et al. Improved metagenomic analysis with Kraken 2 , 2019, Genome Biology.