Usb1 controls U6 snRNP assembly through evolutionarily divergent cyclic phosphodiesterase activities
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S. Butcher | W. M. Westler | D. Brow | E. Montemayor | A. Hoskins | A. Didychuk | A. T. DeLaitsch | T. Carrocci | Stefani E. Lucarelli
[1] A. Hoskins,et al. SF3b1 mutations associated with myelodysplastic syndromes alter the fidelity of branchsite selection in yeast , 2017, Nucleic acids research.
[2] C. Lima,et al. Nuclear RNA Exosome at 3.1 Å Reveals Substrate Specificities, RNA Paths, and Allosteric Inhibition of Rrp44/Dis3. , 2016, Molecular cell.
[3] Chuangye Yan,et al. Structure of a yeast catalytic step I spliceosome at 3.4 Å resolution , 2016, Science.
[4] Yigong Shi,et al. Structure of a yeast activated spliceosome at 3.5 Å resolution , 2016, Science.
[5] John D. Scott,et al. Malonate in the nucleotide-binding site traps human AKAP18 gamma / delta in a novel conformational state. , 2016 .
[6] John D. Scott,et al. Malonate in the nucleotide-binding site traps human AKAP18γ/δ in a novel conformational state. , 2016, Acta crystallographica. Section F, Structural biology communications.
[7] C. Oubridge,et al. CryoEM structure of the spliceosome immediately after branching , 2016, Nature.
[8] R. Silverman,et al. Crystal structure of the mouse hepatitis virus ns2 phosphodiesterase domain that antagonizes RNase L activation. , 2016, The Journal of general virology.
[9] Yigong Shi,et al. The 3.8 Å structure of the U4/U6.U5 tri-snRNP: Insights into spliceosome assembly and catalysis , 2016, Science.
[10] C. Oubridge,et al. CryoEM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 Å resolution , 2016, Nature.
[11] S. Butcher,et al. Structural requirements for protein-catalyzed annealing of U4 and U6 RNAs during di-snRNP assembly , 2015, Nucleic acids research.
[12] Yigong Shi,et al. Structure of a yeast spliceosome at 3.6-angstrom resolution , 2015, Science.
[13] C. Soneson,et al. Human Mpn1 promotes post‐transcriptional processing and stability of U6atac , 2015, FEBS letters.
[14] M. Jinek,et al. Crystal structure of the C‐terminal 2′,5′‐phosphodiesterase domain of group a rotavirus protein VP3 , 2015, Proteins.
[15] A. Jacewicz,et al. Structure and mechanism of E. coli RNA 2′,3′-cyclic phosphodiesterase , 2014, RNA.
[16] S. Butcher,et al. Core structure of the U6 small nuclear ribonucleoprotein at 1.7-Å resolution , 2014, Nature Structural & Molecular Biology.
[17] Yigong Shi,et al. Crystal structures of the Lsm complex bound to the 3′ end sequence of U6 small nuclear RNA , 2013, Nature.
[18] Philip R. Evans,et al. How good are my data and what is the resolution? , 2013, Acta crystallographica. Section D, Biological crystallography.
[19] Daniel W. A. Buchan,et al. Scalable web services for the PSIPRED Protein Analysis Workbench , 2013, Nucleic Acids Res..
[20] S. Shuman,et al. A kinetic framework for tRNA ligase and enforcement of a 2'-phosphate requirement for ligation highlights the design logic of an RNA repair machine. , 2013, RNA.
[21] P. Campbell,et al. Aberrant 3' oligoadenylation of spliceosomal U6 small nuclear RNA in poikiloderma with neutropenia. , 2013, Blood.
[22] C. Soneson,et al. Mpn1, mutated in poikiloderma with neutropenia protein 1, is a conserved 3'-to-5' RNA exonuclease processing U6 small nuclear RNA. , 2012, Cell reports.
[23] K. Ginalski,et al. C16orf57, a gene mutated in poikiloderma with neutropenia, encodes a putative phosphodiesterase responsible for the U6 snRNA 3' end modification. , 2012, Genes & development.
[24] P. Zwart,et al. Towards automated crystallographic structure refinement with phenix.refine , 2012, Acta crystallographica. Section D, Biological crystallography.
[25] Huijong Han,et al. Myelin 2′,3′-Cyclic Nucleotide 3′-Phosphodiesterase: Active-Site Ligand Binding and Molecular Conformation , 2012, PloS one.
[26] Christopher J. Herbert,et al. An in silico approach combined with in vivo experiments enables the identification of a new protein whose overexpression can compensate for specific respiratory defects in Saccharomyces cerevisiae , 2011, BMC Systems Biology.
[27] Philip R. Evans,et al. An introduction to data reduction: space-group determination, scaling and intensity statistics , 2011, Acta crystallographica. Section D, Biological crystallography.
[28] T. Vulliamy,et al. Mutations in C16orf57 and normal-length telomeres unify a subset of patients with dyskeratosis congenita, poikiloderma with neutropenia and Rothmund–Thomson syndrome , 2010, Human molecular genetics.
[29] Liisa Holm,et al. Dali server: conservation mapping in 3D , 2010, Nucleic Acids Res..
[30] P. Emsley,et al. Features and development of Coot , 2010, Acta crystallographica. Section D, Biological crystallography.
[31] Randy J. Read,et al. Acta Crystallographica Section D Biological , 2003 .
[32] R. Lührmann,et al. 3'-cyclic phosphorylation of U6 snRNA leads to recruitment of recycling factor p110 through LSm proteins. , 2008, RNA.
[33] D. Barford,et al. Akap18 Contains a Phosphoesterase Domain that Binds AMP , 2008 .
[34] Randy J. Read,et al. Phaser crystallographic software , 2007, Journal of applied crystallography.
[35] H. Urlaub,et al. Identification, cloning, and functional analysis of the human U6 snRNA-specific terminal uridylyl transferase. , 2006, RNA.
[36] Y. Yuan,et al. Structural basis for recognition and sequestration of UUU(OH) 3' temini of nascent RNA polymerase III transcripts by La, a rheumatic disease autoantigen. , 2006, Molecular cell.
[37] T. Tahirov,et al. Structure of a putative 2'-5' RNA ligase from Pyrococcus horikoshii. , 2005, Acta crystallographica. Section D, Biological crystallography.
[38] D. Lilley,et al. Nucleobase participation in ribozyme catalysis. , 2005, Journal of the American Chemical Society.
[39] Thomas R. Schneider,et al. HKL2MAP: a graphical user interface for macromolecular phasing with SHELX programs , 2004 .
[40] S. Yokoyama,et al. Crystal structure of the 2'-5' RNA ligase from Thermus thermophilus HB8. , 2003, Journal of molecular biology.
[41] Wendell A. Lim,et al. The Structure and Function of Proline Recognition Domains , 2003, Science's STKE.
[42] Raja Mazumder,et al. Detection of novel members, structure–function analysis and evolutionary classification of the 2H phosphoesterase superfamily , 2002, Nucleic acids research.
[43] C. Guthrie,et al. A conserved Lsm-interaction motif in Prp24 required for efficient U4/U6 di-snRNP formation. , 2002, RNA.
[44] S. Wolin,et al. Multiple functional interactions between components of the Lsm2-Lsm8 complex, U6 snRNA, and the yeast La protein. , 2001, Genetics.
[45] R. Maraia,et al. Transcription Termination by RNA Polymerase III in Fission Yeast , 2000, The Journal of Biological Chemistry.
[46] J. Butler,et al. A Nuclear 3′-5′ Exonuclease Involved in mRNA Degradation Interacts with Poly(A) Polymerase and the hnRNA Protein Npl3p , 2000, Molecular and Cellular Biology.
[47] M. Wilm,et al. A doughnut‐shaped heteromer of human Sm‐like proteins binds to the 3′‐end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro , 1999, The EMBO journal.
[48] S. Wolin,et al. A role for the yeast La protein in U6 snRNP assembly: evidence that the La protein is a molecular chaperone for RNA polymerase III transcripts , 1998, The EMBO journal.
[49] Bernd-Joachim Benecke,et al. A highly specific terminal uridylyl transferase modifies the 3'-end of U6 small nuclear RNA , 1998, Nucleic Acids Res..
[50] M. Terns,et al. 3'-end-dependent formation of U6 small nuclear ribonucleoprotein particles in Xenopus laevis oocyte nuclei , 1992, Molecular and cellular biology.
[51] E. Lund,et al. Cyclic 2',3'-phosphates and nontemplated nucleotides at the 3' end of spliceosomal U6 small nuclear RNA's. , 1992, Science.
[52] A. Sentenac,et al. The U6 gene of Saccharomyces cerevisiae is transcribed by RNA polymerase C (III) in vivo and in vitro. , 1990, The EMBO journal.
[53] Christine Guthrie,et al. Spliceosomal RNA U6 is remarkably conserved from yeast to mammals , 1988, Nature.
[54] D. Wright,et al. The capped U6 small nuclear RNA is transcribed by RNA polymerase III. , 1987, The Journal of biological chemistry.
[55] R. Maser,et al. U6 small nuclear RNA is transcribed by RNA polymerase III. , 1986, Proceedings of the National Academy of Sciences of the United States of America.
[56] J. Steitz,et al. Association of the lupus antigen La with a subset of U6 snRNA molecules. , 1985, Nucleic acids research.
[57] J. E. Stefano. Purified lupus antigen la recognizes an oligouridylate stretch common to the 3′ termini of RNA polymerase III transcripts , 1984, Cell.
[58] Smith Ic,et al. A 13 C and 1 H nuclear magnetic resonance study of the conformations of 2',3'-cyclic nucleotides. , 1973 .
[59] I. Smith,et al. A nuclear magnetic resonance study of the influence of aqueous sodium perchlorate and temperature on the solution conformations of uracil nucleosides and nucleotides. , 1972, Biochemistry.
[60] G. Sheldrick. A short history of SHELX. , 2008, Acta crystallographica. Section A, Foundations of crystallography.
[61] Thomas C Terwilliger,et al. SOLVE and RESOLVE: automated structure solution and density modification. , 2003, Methods in enzymology.
[62] Burkhard Rost,et al. The PredictProtein server , 2003, Nucleic Acids Res..
[63] R. D. Gietz,et al. Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. , 2002, Methods in enzymology.
[64] T. Pederson,et al. U 6 small nuclear RNA is transcribed by RNA polymerase III ( cloned human U 6 gene / " TATA box " / intragenic promoter / a-amanitin / La antigen ) , 1999 .
[65] I. Smith,et al. A 13 C and 1 H nuclear magnetic resonance study of the conformations of 2',3'-cyclic nucleotides. , 1973, Journal of the American Chemical Society.