Decoding motor cortical activities of Monkey: A dataset

Motor brain-machine interface (BMI) has great potentials in neural motor prostheses and has received increasing attention during the past decades in the neural engineering field. It requires an approach to decode neural activities that represents desired movements. Much of the progress in decoding algorithms has been driven by the availability of neural data, e.g. spike trains, in some research groups having animal laboratories and capable of performing surgery and building BMI systems. However, researchers in the neural signal processing field often face a dilemma of lacking neural data. To continue the innovation in decoding algorithms, this paper introduces a public neural dataset, the ZJU Neural Decoding Dataset (ZJUNDD). We give the detailed paradigm of the BMI system on monkey, including the experimental setup and the collection of 96-channel motor cortical activities. The dataset contains spike rates of neurons obtained by a consistent spike sorting method. To improve the data quality and reduce outliers, the spike data are carefully selected according to the quality of hand movements of the monkey. A standard protocol is provided for the assessment of decoding algorithms on the dataset, including the partition of training and testing sets, and the evaluation metrics. We also build an online evaluation system in order to enable a fair comparison between decoding approaches. Further, we benchmark several existing algorithms, which provides a basic performance of the methods. To the best of our knowledge, this is the first public dataset of spike trains for the decoding research of motor cortical activities.

[1]  Wei Wu,et al.  Neural Decoding of Cursor Motion Using a Kalman Filter , 2002, NIPS.

[2]  M. Inase,et al.  Neuronal activity in the primate premotor, supplementary, and precentral motor cortex during visually guided and internally determined sequential movements. , 1991, Journal of neurophysiology.

[3]  Nicholas Hatsopoulos,et al.  Decoding continuous and discrete motor behaviors using motor and premotor cortical ensembles. , 2004, Journal of neurophysiology.

[4]  R E Kass,et al.  Recursive bayesian decoding of motor cortical signals by particle filtering. , 2004, Journal of neurophysiology.

[5]  John P. Donoghue,et al.  Connecting cortex to machines: recent advances in brain interfaces , 2002, Nature Neuroscience.

[6]  S. Gielen,et al.  The brain–computer interface cycle , 2009, Journal of neural engineering.

[7]  J. Donoghue,et al.  Neuronal Interactions Improve Cortical Population Coding of Movement Direction , 1999, The Journal of Neuroscience.

[8]  David M. Santucci,et al.  Learning to Control a Brain–Machine Interface for Reaching and Grasping by Primates , 2003, PLoS biology.

[9]  Michael J. Black,et al.  Modeling and decoding motor cortical activity using a switching Kalman filter , 2004, IEEE Transactions on Biomedical Engineering.

[10]  G. Pfurtscheller,et al.  Brain-Computer Interfaces for Communication and Control. , 2011, Communications of the ACM.

[11]  Wei Wu,et al.  Bayesian Population Decoding of Motor Cortical Activity Using a Kalman Filter , 2006, Neural Computation.

[12]  Dipankar Das,et al.  Enhanced SenticNet with Affective Labels for Concept-Based Opinion Mining , 2013, IEEE Intelligent Systems.

[13]  Michael J. Black,et al.  Decoding Complete Reach and Grasp Actions from Local Primary Motor Cortex Populations , 2010, The Journal of Neuroscience.

[14]  Nicholas G. Hatsopoulos,et al.  Brain-machine interface: Instant neural control of a movement signal , 2002, Nature.

[15]  Kai Xu,et al.  Comparisons between linear and nonlinear methods for decoding motor cortical activities of monkey , 2011, 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

[16]  Gang Pan,et al.  FlyingBuddy2: a brain-controlled assistant for the handicapped , 2012, UbiComp '12.

[17]  J.C. Sanchez,et al.  Simultaneus prediction of four kinematic variables for a brain-machine interface using a single recurrent neural network , 2004, The 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

[18]  Chih-Jen Lin,et al.  LIBSVM: A library for support vector machines , 2011, TIST.

[19]  A. Aertsen,et al.  Dynamics of neuronal interactions in monkey cortex in relation to behavioural events , 1995, Nature.