Proteolytic assays on quantum-dot-modified paper substrates using simple optical readout platforms.

Paper-based assays are a promising diagnostic format for point-of-care applications, field deployment, and other low-resource settings. To date, the majority of efforts to integrate nanomaterials with paper-based assays have utilized gold nanoparticles. Here, we show that semiconductor quantum dots (QDs), in combination with Förster resonance energy transfer (FRET), are also suitable nanomaterials for developing paper-based assays. Paper fibers were chemically modified with thiol ligands to immobilize CdSeS/ZnS QDs, the QDs were self-assembled with dye-labeled peptides to generate efficient FRET, and steady-state and fluorescence lifetime imaging microscopy (FLIM) were used for characterization. Peptides were selected as substrates for three different proteases and a series of kinetic assays for proteolytic activity was carried out, including multiplexed assays and pro-enzyme activation assays. Quantitative results were obtained within 5-60 min at levels as low as 1-2 nM of protease. These assays were possible using simple optical readout platforms that did not negate the low cost, ease of use, and overall accessibility advantages of paper-based assays. A violet light-emitting diode (LED) excitation source and color imaging with either a digital camera, consumer webcam, or smartphone camera were sufficient for analysis on the basis of a red/green color intensity ratio. At most, a universal serial bus (USB) connection to a computer was required and the instrumentation cost orders of magnitude less than that typically utilized for in vitro bioanalyses with QDs. This work demonstrates that QDs are valuable probes for developing a new generation of paper-based diagnostics.

[1]  Igor L. Medintz,et al.  Quantum dot-based resonance energy transfer and its growing application in biology. , 2009, Physical chemistry chemical physics : PCCP.

[2]  John D Brennan,et al.  Reagentless bidirectional lateral flow bioactive paper sensors for detection of pesticides in beverage and food samples. , 2009, Analytical chemistry.

[3]  J. Storhoff,et al.  Selective colorimetric detection of polynucleotides based on the distance-dependent optical properties of gold nanoparticles. , 1997, Science.

[4]  Jerry C. Chang,et al.  Biocompatible quantum dots for biological applications. , 2011, Chemistry & biology.

[5]  G. Whitesides,et al.  Simple telemedicine for developing regions: camera phones and paper-based microfluidic devices for real-time, off-site diagnosis. , 2008, Analytical chemistry.

[6]  G. Whitesides,et al.  Diagnostics for the developing world: microfluidic paper-based analytical devices. , 2010, Analytical chemistry.

[7]  Martin Moskovits,et al.  Surface-enhanced Raman spectroscopy for DNA detection by nanoparticle assembly onto smooth metal films. , 2007, Journal of the American Chemical Society.

[8]  Ulrich J Krull,et al.  Beyond labels: a review of the application of quantum dots as integrated components of assays, bioprobes, and biosensors utilizing optical transduction. , 2010, Analytica chimica acta.

[9]  D. Brömme,et al.  The role of cathepsins in osteoporosis and arthritis: rationale for the design of new therapeutics. , 2005, Advanced drug delivery reviews.

[10]  Igor L. Medintz,et al.  Monitoring botulinum neurotoxin a activity with peptide-functionalized quantum dot resonance energy transfer sensors. , 2011, ACS nano.

[11]  Igor L. Medintz,et al.  Synthesizing and modifying peptides for chemoselective ligation and assembly into quantum dot-peptide bioconjugates. , 2013, Methods in molecular biology.

[12]  Igor L. Medintz,et al.  Monitoring of enzymatic proteolysis on a electroluminescent-CCD microchip platform using quantum dot-peptide substrates , 2009 .

[13]  S. Hossain,et al.  β-Galactosidase-based colorimetric paper sensor for determination of heavy metals. , 2011, Analytical chemistry.

[14]  Chad A Mirkin,et al.  Microarray-based multiplexed scanometric immunoassay for protein cancer markers using gold nanoparticle probes. , 2009, Analytical chemistry.

[15]  S. Verhelst,et al.  Activity‐Based Probes for the Study of Proteases: Recent Advances and Developments , 2012, ChemMedChem.

[16]  Fake Li,et al.  Rapid urinary trypsinogen-2 test in the early diagnosis of acute pancreatitis: a meta-analysis. , 2012, Clinical biochemistry.

[17]  Anatoly V. Zherdev,et al.  Quantum dot-based lateral flow immunoassay for detection of chloramphenicol in milk , 2013, Analytical and Bioanalytical Chemistry.

[18]  Lydia L. Sohn,et al.  An Artificial Nanopore for Molecular Sensing , 2003 .

[19]  M. Osborne,et al.  Brightening, blinking, bluing and bleaching in the life of a quantum dot: friend or foe? , 2009, Chemphyschem : a European journal of chemical physics and physical chemistry.

[20]  John D. Brennan,et al.  Bioactive paper: Biomolecule immobilization methods and applications in environmental monitoring , 2013 .

[21]  K. Besteman,et al.  Enzyme-Coated Carbon Nanotubes as Single-Molecule Biosensors , 2003 .

[22]  Itamar Willner,et al.  Optical molecular sensing with semiconductor quantum dots (QDs). , 2012, Chemical Society reviews.

[23]  Samuel K Sia,et al.  Commercialization of microfluidic point-of-care diagnostic devices. , 2012, Lab on a chip.

[24]  Ulrich J. Krull,et al.  Paper-based solid-phase nucleic acid hybridization assay using immobilized quantum dots as donors in fluorescence resonance energy transfer. , 2013, Analytical chemistry.

[25]  Yuanfeng Wang,et al.  A sensitive lateral flow test strip based on silica nanoparticle/CdTe quantum dot composite reporter probes , 2012 .

[26]  John D Brennan,et al.  Bioactive paper dipstick sensors for acetylcholinesterase inhibitors based on sol-gel/enzyme/gold nanoparticle composites. , 2010, The Analyst.

[27]  S. Hossain,et al.  Multiplexed paper test strip for quantitative bacterial detection , 2012, Analytical and Bioanalytical Chemistry.

[28]  A. Olson,et al.  Revisiting Catalysis by Chymotrypsin Family Serine Proteases Using Peptide Substrates and Inhibitors with Unnatural Main Chains* , 1999, The Journal of Biological Chemistry.

[29]  Hedi Mattoussi,et al.  Luminescent quantum dots as platforms for probing in vitro and in vivo biological processes. , 2012, Advanced drug delivery reviews.

[30]  A. Light,et al.  Enterokinase (enteropeptidase): comparative aspects. , 1989, Trends in biochemical sciences.

[31]  U. Stenman,et al.  Urinary trypsinogen-2 test strip for acute pancreatitis , 1996, The Lancet.

[32]  George M. Whitesides,et al.  Paper-based electroanalytical devices for accessible diagnostic testing , 2013 .

[33]  Xiaohu Gao,et al.  Designing multifunctional quantum dots for bioimaging, detection, and drug delivery. , 2010, Chemical Society reviews.

[34]  P. Rosenthal,et al.  Cysteine proteases of malaria parasites. , 2004, International journal for parasitology.

[35]  Christopher M. Overall,et al.  Validating matrix metalloproteinases as drug targets and anti-targets for cancer therapy , 2006, Nature Reviews Cancer.

[36]  Chad A Mirkin,et al.  Scanometric microRNA array profiling of prostate cancer markers using spherical nucleic acid-gold nanoparticle conjugates. , 2012, Analytical chemistry.

[37]  G. Whitesides,et al.  Measuring markers of liver function using a micropatterned paper device designed for blood from a fingerstick. , 2012, Analytical chemistry.

[38]  Igor L. Medintz,et al.  Sensing caspase 3 activity with quantum dot-fluorescent protein assemblies. , 2009, Journal of the American Chemical Society.

[39]  C. Mirkin,et al.  Scanometric DNA array detection with nanoparticle probes. , 2000, Science.

[40]  G. Rosenberg Matrix metalloproteinases and their multiple roles in neurodegenerative diseases , 2009, The Lancet Neurology.

[41]  Chad A Mirkin,et al.  Chip-based scanometric detection of mercuric ion using DNA-functionalized gold nanoparticles. , 2008, Analytical chemistry.

[42]  Claudio Parolo,et al.  Paper-based nanobiosensors for diagnostics. , 2013, Chemical Society reviews.

[43]  Satish K. Sharma,et al.  Recent developments in the activation process of bovine chymotrypsinogen A , 1981 .

[44]  Nikolai Gaponik,et al.  Application of polymer quantum dot-enzyme hybrids in the biosensor development and test paper fabrication. , 2012, Analytical chemistry.

[45]  A. Bausch,et al.  Label-free electrical determination of trypsin activity by a silicon-on-insulator based thin film resistor. , 2007, Chemphyschem : a European journal of chemical physics and physical chemistry.

[46]  M. Bogyo,et al.  New approaches for dissecting protease functions to improve probe development and drug discovery , 2012, Nature Structural &Molecular Biology.

[47]  Robert Pelton,et al.  Bioactive paper provides a low-cost platform for diagnostics , 2009, TrAC Trends in Analytical Chemistry.

[48]  T. Salo,et al.  Trypsins and their role in carcinoma growth. , 2006, Experimental cell research.

[49]  Ying Wang,et al.  Rapid and sensitive detection of protein biomarker using a portable fluorescence biosensor based on quantum dots and a lateral flow test strip. , 2010, Analytical chemistry.

[50]  A. Skalka,et al.  The retroviral enzymes. , 1994, Annual review of biochemistry.

[51]  George M. Whitesides,et al.  A Paper-Based Multiplexed Transaminase Test for Low-Cost, Point-of-Care Liver Function Testing , 2012, Science Translational Medicine.

[52]  Igor L. Medintz,et al.  Quantum Dots in Bioanalysis: A Review of Applications across Various Platforms for Fluorescence Spectroscopy and Imaging , 2013, Applied spectroscopy.

[53]  J. Lott,et al.  Clinical utility of a rapid test for uristatin. , 2002, Clinical Biochemistry.

[54]  Masahiko Hirota,et al.  The role of trypsin, trypsin inhibitor, and trypsin receptor in the onset and aggravation of pancreatitis , 2006, Journal of Gastroenterology.

[55]  G. Whitesides,et al.  Patterned paper as a platform for inexpensive, low-volume, portable bioassays. , 2007, Angewandte Chemie.

[56]  Igor L. Medintz,et al.  Proteolytic activity monitored by fluorescence resonance energy transfer through quantum-dot–peptide conjugates , 2006, Nature materials.

[57]  H. Yeh,et al.  Single-quantum-dot-based DNA nanosensor , 2005, Nature materials.

[58]  Igor L. Medintz,et al.  Kinetics of metal-affinity driven self-assembly between proteins or peptides and CdSe-ZnS quantum dots , 2007 .