Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments
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Rémy Bruggmann | Heiko Schoof | Bernd Weisshaar | Khalid Meksem | Agim Ballvora | Christiane Gebhardt | R. Bruggmann | K. Meksem | B. Weisshaar | H. Schoof | C. Gebhardt | A. Ballvora | Hirofumi Ishihara | Prisca Viehöver | Anika Jöcker | Prisca Viehöver | Anika Jöcker | Hirofumi Ishihara | Jürgen Paal | Jürgen Paal
[1] D. Bouktila,et al. Quantitative Resistance , 2022, An Introduction to Plant Immunity.
[2] S. Knapp,et al. Quantitative resistance to Phytophthora infestans in potato: a case study for QTL mapping in an allogamous plant species. , 1994, Genetics.
[3] G. Martin,et al. High density molecular linkage maps of the tomato and potato genomes. , 1992, Genetics.
[4] J. Bennetzen,et al. The genetic colinearity of rice and other cereals on the basis of genomic sequence analysis. , 2003, Current opinion in plant biology.
[5] K. Theres,et al. Comparative sequence analysis reveals extensive microcolinearity in the lateral suppressor regions of the tomato, Arabidopsis, and Capsella genomes. , 2001, The Plant cell.
[6] S. Chisholm,et al. Host-Microbe Interactions: Shaping the Evolution of the Plant Immune Response , 2022 .
[7] Doreen Ware,et al. Comparison of genes among cereals. , 2003, Current opinion in plant biology.
[8] P. Schulze-Lefert,et al. A contiguous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome. , 1998, Nucleic acids research.
[9] E. Jacobsen,et al. Mapping of the cyst nematode resistance locus Gpa2 in potato using a strategy based on comigrating AFLP markers , 1997, Theoretical and Applied Genetics.
[10] Abdelali Barakat,et al. Plant genome archaeology: evidence for conserved ancestral chromosome segments in dicotyledonous plant species. , 2003, Plant biotechnology journal.
[11] M. Ercolano,et al. The R1 gene for potato resistance to late blight (Phytophthora infestans) belongs to the leucine zipper/NBS/LRR class of plant resistance genes. , 2002, The Plant journal : for cell and molecular biology.
[12] B. Birren,et al. Construction and characterization of a human bacterial artificial chromosome library. , 1996, Genomics.
[13] D. Leister,et al. A high-resolution map of the vicinity of the R1 locus on chromosome V of potato based on RFLP and AFLP markers , 1995, Molecular and General Genetics MGG.
[14] D. Baulcombe,et al. A potato hypersensitive resistance gene against potato virus X maps to a resistance gene cluster on chromosome 5 , 1997, Theoretical and Applied Genetics.
[15] J. Valkonen,et al. Organization of genes controlling disease resistance in the potato genome. , 2001, Annual review of phytopathology.
[16] J. Ellis,et al. genetic complexity of fungal resistance genes in plants , 1993 .
[17] Rolf Apweiler,et al. InterProScan - an integration platform for the signature-recognition methods in InterPro , 2001, Bioinform..
[18] Rolf Apweiler,et al. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 , 2000, Nucleic Acids Res..
[19] Michele Morgante,et al. Evolution of DNA Sequence Nonhomologies among Maize Inbredsw⃞ , 2005, The Plant Cell Online.
[20] H. Fu,et al. Intraspecific violation of genetic colinearity and its implications in maize , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[21] R. Durbin,et al. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. , 1995, Gene.
[22] Kenneth A. Brown,et al. Problems and Perspectives , 2009, The Search for Security in the Pacific 1901-1914.
[23] C. Gebhardt,et al. Single nucleotide polymorphism (SNP) genotyping as basis for developing a PCR-based marker highly diagnostic for potato varieties with high resistance to Globodera pallida pathotype Pa2/3 , 2006, Molecular Breeding.
[24] The Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana , 2000, Nature.
[25] F. Salamini,et al. Analysis of quantitative trait loci (QTLs) and quantitative trait alleles (QTAs) for potato tuber yield and starch content , 1998, Theoretical and Applied Genetics.
[26] Abdelali Barakat,et al. Comparative mapping between potato (Solanum tuberosum) and Arabidopsis thaliana reveals structurally conserved domains and ancient duplications in the potato genome. , 2003, The Plant journal : for cell and molecular biology.
[27] Rolf Apweiler,et al. The SWISS-PROT protein sequence data bank and its supplement TrEMBL , 1997, Nucleic Acids Res..
[28] Rod A Wing,et al. Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. , 2005, Genome research.
[29] F. Salamini,et al. RFLP mapping on potato chromosomes of two genes controlling extreme resistance to potato virus X (PVX) , 1991, Molecular and General Genetics MGG.
[30] F. Salamini,et al. RFLP analysis and linkage mapping in Solanum tuberosum , 1989, Theoretical and Applied Genetics.
[31] W. Stiekema,et al. Quantitatively-inherited resistance toGlobodera pallida is dominated by one major locus inSolanum spegazzinii , 1994, Theoretical and Applied Genetics.
[32] S. Goff,et al. Sequence and analysis of the tomato JOINTLESS locus. , 2001, Plant physiology.
[33] B C Meyers,et al. Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. , 1998, Genome research.
[34] F. Salamini,et al. Cold sweetening in diploid potato: mapping quantitative trait loci and candidate genes. , 2002, Genetics.
[35] Alex Bateman,et al. The InterPro database, an integrated documentation resource for protein families, domains and functional sites , 2001, Nucleic Acids Res..
[36] H. Ross. Potato Breeding Problems and Perspectives , 1986 .
[37] F. Salamini,et al. TheR1 gene conferring race-specific resistance toPhytophthora infestans in potato is located on potato chromosome V , 1992, Molecular and General Genetics MGG.
[38] Ottoline Leyser,et al. The Arabidopsis F-box protein TIR1 is an auxin receptor , 2005, Nature.
[39] D. Baulcombe,et al. Agrobacterium transient expression system as a tool for the isolation of disease resistance genes: application to the Rx2 locus in potato. , 2000, The Plant journal : for cell and molecular biology.
[40] S. Salvi,et al. To clone or not to clone plant QTLs: present and future challenges. , 2005, Trends in plant science.
[41] J. Bakker,et al. Two additive QTLs conferring broad-spectrum resistance in potato to Globodera pallida are localized on resistance gene clusters , 2000, Theoretical and Applied Genetics.
[42] E. Birney,et al. Apollo: a sequence annotation editor , 2002, Genome Biology.
[43] Jiming Jiang,et al. The R1 resistance gene cluster contains three groups of independently evolving, type I R1 homologues and shows substantial structural variation among haplotypes of Solanum demissum. , 2005, The Plant journal : for cell and molecular biology.
[44] P. Schulze-Lefert,et al. Regulators of cell death in disease resistance , 2000, Plant Molecular Biology.
[45] Gordon Gremme,et al. Engineering a software tool for gene structure prediction in higher organisms , 2005, Inf. Softw. Technol..
[46] S. Seah,et al. The nematode-resistance gene, Mi-1, is associated with an inverted chromosomal segment in susceptible compared to resistant tomato , 2004, Theoretical and Applied Genetics.
[47] Christian E. V. Storm,et al. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. , 2001, Journal of molecular biology.
[48] R. Waugh,et al. QTL for field resistance to late blight in potato are strongly correlated with maturity and vigour , 2004, Molecular Breeding.
[49] Lincoln Stein,et al. Genome annotation: from sequence to biology , 2001, Nature Reviews Genetics.
[50] Peter M. Waterhouse,et al. Exploring plant genomes by RNA-induced gene silencing , 2003, Nature Reviews Genetics.
[51] S. Tanksley,et al. Recombination around the Tm2a and Mi resistance genes in different crosses of Lycopersicon peruvianum , 2004, Theoretical and Applied Genetics.
[52] P. Schulze-Lefert. Plant Immunity: The Origami of Receptor Activation , 2004, Current Biology.
[53] Alex Bateman,et al. InterPro : An integrated documentation resource for protein families , domains and functional sites The InterPro Consortium : , 2005 .
[54] F. Salamini,et al. Localization by restriction fragment length polymorphism mapping in potato of a major dominant gene conferring resistance to the potato cyst nematode Globodera rostocbiensis , 1990, Molecular and General Genetics MGG.
[55] S. Tanksley,et al. RFLP Maps Based on a Common Set of Clones Reveal Modes of Chromosomal Evolution in Potato and Tomato. , 1988, Genetics.
[56] D. Hyten,et al. Two large-insert soybean genomic libraries constructed in a binary vector: applications in chromosome walking and genome wide physical mapping , 2000, Theoretical and Applied Genetics.
[57] Agim Ballvora,et al. Assessing genetic potential in germplasm collections of crop plants by marker-trait association: a case study for potatoes with quantitative variation of resistance to late blight and maturity type , 2004, Molecular Breeding.
[58] P. Struik,et al. Can the QTL for late blight resistance on potato chromosome 5 be attributed to foliage maturity type? , 2002, Theoretical and Applied Genetics.
[59] S. Tanksley,et al. Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[60] I. Longden,et al. EMBOSS: the European Molecular Biology Open Software Suite. , 2000, Trends in genetics : TIG.
[61] F. Salamini,et al. A genetic analysis of quantitative resistance to late blight in potato: towards marker-assisted selection , 1999, Molecular Breeding.
[62] M. Borodovsky,et al. GeneMark.hmm: new solutions for gene finding. , 1998, Nucleic acids research.
[63] C. Gebhardt. Potato genetics: molecular maps and more , 2004 .
[64] Q. Sun,et al. Resistance gene complexes: evolution and utilization. , 2001, Annual review of phytopathology.
[65] V. Solovyev,et al. Ab initio gene finding in Drosophila genomic DNA. , 2000, Genome research.