Perceiving molecular evolution processes in Escherichia coli by comprehensive metabolite and gene expression profiling
暂无分享,去创建一个
Karsten Niehaus | Anke Becker | Karl Friehs | Erwin Flaschel | A. Barsch | K. Niehaus | A. Becker | K. Friehs | E. Flaschel | Chandran Vijayendran | Aiko Barsch | Chandran Vijayendran
[1] T. Ferenci,et al. Experimental analysis of molecular events during mutational periodic selections in bacterial evolution. , 2000, Genetics.
[2] Dolph Schluter,et al. Parallel Evolution and Inheritance of Quantitative Traits , 2004, The American Naturalist.
[3] Barbara E. Wright,et al. Stress‐directed adaptive mutations and evolution , 2004, Molecular microbiology.
[4] J R Roth,et al. Role of gene duplications in the adaptation of Salmonella typhimurium to growth on limiting carbon sources. , 1989, Genetics.
[5] Markus J. Herrgård,et al. Integrating high-throughput and computational data elucidates bacterial networks , 2004, Nature.
[6] S. Rosenberg,et al. General stress response regulator RpoS in adaptive mutation and amplification in Escherichia coli. , 2004, Genetics.
[7] Yves Gibon,et al. GMD@CSB.DB: the Golm Metabolome Database , 2005, Bioinform..
[8] A. Fernie,et al. Metabolite profiling: from diagnostics to systems biology , 2004, Nature Reviews Molecular Cell Biology.
[9] B. Palsson,et al. Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. , 2005, Genome research.
[10] Helen E. Parkinson,et al. ArrayExpress—a public database of microarray experiments and gene expression profiles , 2006, Nucleic Acids Res..
[11] R. Kolter,et al. Prolonged Stationary-Phase Incubation Selects forlrp Mutations in Escherichia coliK-12 , 2000, Journal of bacteriology.
[12] J. Bull,et al. Exceptional convergent evolution in a virus. , 1997, Genetics.
[13] T. Ferenci,et al. Adaptive mgl-regulatory mutations and genetic diversity evolving in glucose-limited Escherichia coli populations. , 1999, Environmental microbiology.
[14] Atul J. Butte,et al. Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks , 2005, BMC Bioinformatics.
[15] S. Finkel. Long-term survival during stationary phase: evolution and the GASP phenotype , 2006, Nature Reviews Microbiology.
[16] Gary D. Bader,et al. An automated method for finding molecular complexes in large protein interaction networks , 2003, BMC Bioinformatics.
[17] T. Ferenci,et al. The generation of multiple co-existing mal-regulatory mutations through polygenic evolution in glucose-limited populations of Escherichia coli. , 1999, Environmental microbiology.
[18] W Arber,et al. Genomic evolution during a 10,000-generation experiment with bacteria. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[19] R. Kolter,et al. Evolution of microbial diversity during prolonged starvation. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[20] M. Riley,et al. MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products. , 2000, Microbial & comparative genomics.
[21] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[22] Folker Meyer,et al. Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression. , 2003, Journal of biotechnology.
[23] R. Lenski,et al. Rapid phenotypic change and diversification of a soil bacterium during 1000 generations of experimental evolution. , 2001, Microbiology.
[24] J. Adams,et al. Evolution of Escherichia coli during growth in a constant environment. , 1987, Genetics.
[25] Anthony D Long,et al. Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature. , 2003, Physiological genomics.
[26] R. Lenski,et al. Microbial genetics: Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation , 2003, Nature Reviews Genetics.
[27] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[28] T. Ferenci,et al. An analysis of multifactorial influences on the transcriptional control of ompF and ompC porin expression under nutrient limitation. , 2001, Microbiology.
[29] D. Kell,et al. A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations , 2001, Nature Biotechnology.
[30] L. Loewe,et al. High Deleterious Genomic Mutation Rate in Stationary Phase of Escherichia coli , 2003, Science.
[31] Roberto Kolter,et al. Escherichia coli evolution during stationary phase. , 2004, Research in microbiology.
[32] R. Lenski,et al. Evolution of high mutation rates in experimental populations of E. coli , 1997, Nature.
[33] Monica Riley,et al. GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins , 2004, Nucleic Acids Res..
[34] R. Lenski,et al. Parallel changes in gene expression after 20,000 generations of evolution in Escherichia coli , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[35] Martin Kuiper,et al. BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks , 2005, Bioinform..
[36] Valeria Souza,et al. Stress-Induced Mutagenesis in Bacteria , 2003, Science.
[37] H. Nikaido. Molecular Basis of Bacterial Outer Membrane Permeability Revisited , 2003, Microbiology and Molecular Biology Reviews.
[38] A. Barabasi,et al. Network biology: understanding the cell's functional organization , 2004, Nature Reviews Genetics.
[39] R. Kolter,et al. Mutations Enhancing Amino Acid Catabolism Confer a Growth Advantage in Stationary Phase , 1999, Journal of bacteriology.
[40] R. Lenski,et al. Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[41] D. Botstein,et al. Systematic changes in gene expression patterns following adaptive evolution in yeast. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[42] R. Tibshirani,et al. Significance analysis of microarrays applied to the ionizing radiation response , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[43] S. Rhee,et al. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. , 2004, The Plant journal : for cell and molecular biology.
[44] T. Nakae,et al. The outer membrane of Gram-negative bacteria. , 1979, Advances in microbial physiology.
[45] Vladimir Batagelj,et al. Pajek - Program for Large Network Analysis , 1999 .