Detection of DNA viruses in prostate cancer

We tested prostatic secretions from men with and without prostate cancer (13 cases and 13 matched controls) or prostatitis (18 cases and 18 matched controls) with metagenomic sequencing. A large number (>200) of viral reads was only detected among four prostate cancer cases (1 patient each positive for Merkel cell polyomavirus, JC polyomavirus and Human Papillomavirus types 89 or 40, respectively). Lower numbers of reads from a large variety of viruses were detected in all patient groups. Our knowledge of the biology of the prostate may be furthered by the fact that DNA viruses are commonly shed from the prostate and can be readily detected by metagenomic sequencing of expressed prostate secretions.

[1]  M. Pontari,et al.  The National Institutes of Health chronic prostatitis symptom index: Development and validation of a new outcome measure , 1999 .

[2]  J. Dillner,et al.  Expressed Prostate Secretions in the Study of Human Papillomavirus Epidemiology in the Male , 2013, PloS one.

[3]  J. Paoli,et al.  Unbiased Approach for Virus Detection in Skin Lesions , 2013, PloS one.

[4]  T. Guzzo,et al.  Multiple repeat prostate biopsies and the detection of clinically insignificant cancer in men with large prostates. , 2014, Urology.

[5]  O. Dereure,et al.  Human Skin Microbiota: High Diversity of DNA Viruses Identified on the Human Skin by High Throughput Sequencing , 2012, PloS one.

[6]  F. Algaba,et al.  The role of inflammation and infection in the pathogenesis of prostate carcinoma , 2007, BJU international.

[7]  Joakim Dillner,et al.  Phylogenetically diverse TT virus viremia among pregnant women. , 2012, Virology.

[8]  Colin N. Dewey,et al.  De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis , 2013, Nature Protocols.

[9]  D. Engeler,et al.  EAU guidelines on chronic pelvic pain. , 2004, European urology.

[10]  W. Willett,et al.  Gonorrhea, Syphilis, Clinical Prostatitis, and the Risk of Prostate Cancer , 2006, Cancer Epidemiology Biomarkers & Prevention.

[11]  Richard Durbin,et al.  Fast and accurate long-read alignment with Burrows–Wheeler transform , 2010, Bioinform..

[12]  J. Dillner,et al.  Metagenomic sequencing of expressed prostate secretions , 2014, Journal of medical virology.

[13]  Joakim Dillner,et al.  High throughput sequencing reveals diversity of Human Papillomaviruses in cutaneous lesions , 2011, International journal of cancer.

[14]  M. Pontari,et al.  The National Institutes of Health chronic prostatitis symptom index: development and validation of a new outcome measure. Chronic Prostatitis Collaborative Research Network. , 1999, The Journal of urology.

[15]  Nicholas A. Bokulich,et al.  Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing , 2012, Nature Methods.

[16]  A. Jemal,et al.  Cancer Statistics, 2009 , 2009, CA: a cancer journal for clinicians.

[17]  T. Guthrie,et al.  Prostate cancer. , 2020, American family physician.

[18]  T. H. van der Kwast,et al.  [EAU guidelines on prostate cancer. Part II: treatment of advanced, relapsing, and castration-resistant prostate cancer]. , 2011, Actas urologicas espanolas.

[19]  J. Moodley,et al.  Next-generation sequencing of cervical DNA detects human papillomavirus types not detected by commercial kits , 2012, Virology Journal.

[20]  L. Dennis,et al.  Epidemiologic association between prostatitis and prostate cancer. , 2002, Urology.

[21]  E. Bongcam-Rudloff,et al.  The bioinformatics of viral metagenomics , 2013 .

[22]  F. Schmidt Meta-Analysis , 2008 .

[23]  T. Wilt,et al.  Correlates and prevalence of prostatitis in a large community-based cohort of older men. , 2005, Urology.

[24]  R. Sobti,et al.  Implication of high risk Human papillomavirus HR-HPV infection in prostate cancer in Indian population- A pioneering case-control analysis , 2015, Scientific Reports.

[25]  Junjian Liu,et al.  The Role of Prostatitis in Prostate Cancer: Meta-Analysis , 2013, PloS one.

[26]  Richard Durbin,et al.  Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .

[27]  B. Wells,et al.  Prostate cancer and sexually transmitted diseases: a meta-analysis. , 2005, Family medicine.

[28]  T. H. van der Kwast,et al.  EAU guidelines on prostate cancer. Part II: Treatment of advanced, relapsing, and castration-resistant prostate cancer. , 2011, European urology.

[29]  J. Witte,et al.  Prostatitis, Sexually Transmitted Diseases, and Prostate Cancer: The California Men's Health Study , 2007, PloS one.

[30]  M. Lehtinen,et al.  Sero‐epidemiologal association between human‐papillomavirus infection and risk of prostate cancer , 1998 .

[31]  M. Lehtinen,et al.  Sero-epidemiological association between human-papillomavirus infection and risk of prostate cancer. , 1998, International journal of cancer.

[32]  J. Dillner,et al.  Next generation sequencing for human papillomavirus genotyping. , 2013, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.