Metabolic engineering of Escherichia coli for enhanced arginine biosynthesis

BackgroundArginine is a high-value product, especially for the pharmaceutical industry. Growing demand for environmental-friendly and traceable products have stressed the need for microbial production of this amino acid. Therefore, the aim of this study was to improve arginine production in Escherichia coli by metabolic engineering and to establish a fermentation process in 1-L bioreactor scale to evaluate the different mutants.ResultsFirstly, argR (encoding an arginine responsive repressor protein), speC, speF (encoding ornithine decarboxylases) and adiA (encoding an arginine decarboxylase) were knocked out and the feedback-resistant argA214 or argA215 were introduced into the strain. Three glutamate independent mutants were assessed in bioreactors. Unlike the parent strain, which did not excrete any arginine during glucose fermentation, the constructs produced between 1.94 and 3.03 g/L arginine. Next, wild type argA was deleted and the gene copy number of argA214 was raised, resulting in a slight increase in arginine production (4.11 g/L) but causing most of the carbon flow to be redirected toward acetate. The V216A mutation in argP (transcriptional regulator of argO, which encodes for an arginine exporter) was identified as a potential candidate for improved arginine production. The combination of multicopy of argP216 or argO and argA214 led to nearly 2-fold and 3-fold increase in arginine production, respectively, and a reduction of acetate formation.ConclusionsIn this study, E. coli was successfully engineered for enhanced arginine production. The ∆adiA, ∆speC, ∆speF, ∆argR, ∆argA mutant with high gene copy number of argA214 and argO produced 11.64 g/L of arginine in batch fermentation, thereby demonstrating the potential of E. coli as an industrial producer of arginine.

[1]  D. Morris,et al.  Biodegradative ornithine decarboxylase of Escherichia coli. Purification, properties, and pyridoxal 5'-phosphate binding site. , 1975, Biochemistry.

[2]  S. Lee,et al.  Metabolic engineering of microorganisms for the production of L-arginine and its derivatives , 2014, Microbial Cell Factories.

[3]  J. Gowrishankar,et al.  Environmental regulation operating at the promoter clearance step of bacterial transcription. , 2007, Genes & development.

[4]  J. Loscalzo L-arginine and atherothrombosis. , 2004, The Journal of nutrition.

[5]  R. Celis Repression and activation of arginine transport genes in Escherichia coli K 12 by the ArgP protein. , 1999, Journal of molecular biology.

[6]  M. Vrljic,et al.  A new type of transporter with a new type of cellular function: l‐lysine export from Corynebacterium glutamicum , 1996, Molecular microbiology.

[7]  J. Gowrishankar,et al.  Evidence for an Arginine Exporter Encoded by yggA (argO) That Is Regulated by the LysR-Type Transcriptional Regulator ArgP in Escherichia coli , 2004, Journal of bacteriology.

[8]  T. Näsholm,et al.  Low nitrogen losses with a new source of nitrogen for cultivation of conifer seedlings. , 2002, Environmental science & technology.

[9]  K. Kubota,et al.  MICROBIAL PRODUCTION OF L-ARGININE , 1973 .

[10]  T. Hermann Industrial production of amino acids by coryneform bacteria. , 2003, Journal of biotechnology.

[11]  M. Malamy,et al.  Use of Inducible Feedback-ResistantN-Acetylglutamate Synthetase (argA) Genes for Enhanced Arginine Biosynthesis by Genetically EngineeredEscherichia coli K-12 Strains , 1998, Applied and Environmental Microbiology.

[12]  H. Sahm,et al.  Identification of glyA (Encoding Serine Hydroxymethyltransferase) and Its Use Together with the Exporter ThrE To Increase l-Threonine Accumulation by Corynebacterium glutamicum , 2002, Applied and Environmental Microbiology.

[13]  H. Mori,et al.  Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection , 2006, Molecular systems biology.

[14]  T. F. Celis Independent Regulation of Transport and Biosynthesis of Arginine in Escherichia coli K-12 , 1977, Journal of bacteriology.

[15]  S. Udaka,et al.  STUDIES ON THE AMINO ACID FERMENTATION , 1957 .

[16]  D. Charlier,et al.  Competitive activation of the Escherichia coli argO gene coding for an arginine exporter by the transcriptional regulators Lrp and ArgP , 2009, Molecular microbiology.

[17]  R. Appleyard Segregation of Lambda Lysogenicity during Bacterial Recombination in Escherichia Coli K12. , 1954, Genetics.

[18]  W. Maas,et al.  The arginine repressor of Escherichia coli. , 1994, Microbiological reviews.

[19]  H. Mori,et al.  Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. , 2006, DNA research : an international journal for rapid publication of reports on genes and genomes.

[20]  A. Bellmann,et al.  Expression control and specificity of the basic amino acid exporter LysE of Corynebacterium glutamicum. , 2001, Microbiology.

[21]  W. Holms,et al.  Control of carbon flux to acetate excretion during growth of Escherichia coli in batch and continuous cultures. , 1989, Journal of general microbiology.

[22]  Carmelita N. Marbaniang,et al.  Role of ArgP (IciA) in Lysine-Mediated Repression in Escherichia coli , 2011, Journal of bacteriology.

[23]  U. Baumann,et al.  An efficient one-step site-directed and site-saturation mutagenesis protocol. , 2004, Nucleic acids research.

[24]  l-Isoleucine Production with Corynebacterium glutamicum: Further Flux Increase and Limitation of Export , 1996, Applied and environmental microbiology.

[25]  J. H. Schwartz,et al.  ANALYSIS OF THE INHIBITION OF GROWTH PRODUCED BY CANAVANINE IN ESCHERICHIA COLI , 1960, Journal of bacteriology.

[26]  D. Morris,et al.  Comparison of the biosynthetic and biodegradative ornithine decarboxylases of Escherichia coli. , 1977, Biochemistry.

[27]  W. Maas,et al.  Feedback inhibition of acetylglutamate synthetase by arginine in Escherichia coli. , 1963, Archives of biochemistry and biophysics.

[28]  K. Shimizu,et al.  Metabolic control analysis for lysine synthesis using Corynebacterium glutamicum and experimental verification. , 2000, Journal of bioscience and bioengineering.

[29]  M. Saier,et al.  Export of l-Isoleucine from Corynebacterium glutamicum: a Two-Gene-Encoded Member of a New Translocator Family , 2002, Journal of bacteriology.

[30]  L. Isaksson,et al.  A host/plasmid system that is not dependent on antibiotics and antibiotic resistance genes for stable plasmid maintenance in Escherichia coli. , 2004, Journal of biotechnology.

[31]  S. Udaka,et al.  Studies on the amino acid fermentation. Part 1. Production of L-glutamic acid by various microorganisms. , 2004, The Journal of general and applied microbiology.

[32]  T. Utagawa Production of arginine by fermentation. , 2004, The Journal of nutrition.

[33]  Sung Gyun Kang,et al.  One-Step Sequence- and Ligation-Independent Cloning as a Rapid and Versatile Cloning Method for Functional Genomics Studies , 2012, Applied and Environmental Microbiology.

[34]  S. Lee,et al.  Metabolic engineering of Corynebacterium glutamicum for L-arginine production , 2011, Nature Communications.

[35]  Michael Bott,et al.  A high-throughput approach to identify genomic variants of bacterial metabolite producers at the single-cell level , 2012, Genome Biology.

[36]  W. Maas,et al.  Mutant of Escherichia coli K-12 Defective in the Transport of Basic Amino Acids , 1973, Journal of bacteriology.

[37]  G. Church,et al.  Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization , 1997, Journal of bacteriology.

[38]  H W Doelle,et al.  Effect of specific growth rate and glucose concentration on growth and glucose metabolism of Escherichia coli K-12. , 1976, Microbios.