Human IFIT3 Protein Induces Interferon Signaling and Inhibits Adenovirus Immediate Early Gene Expression

IFITs belong to a family of IFN-induced proteins that have broad antiviral functions, primarily studied with RNA viruses leaving a gap of knowledge on the effects of these proteins on DNA viruses. In this study we show that IFIT3, with its partner proteins IFIT1 and IFIT2, specifically restricts replication of human Ad, a DNA virus, by stimulating IFNβ production via the STING and MAVS pathways. ABSTRACT Interferons (IFNs) are one of the hallmarks of host antiviral immunity. IFNs exert their antiviral activities through the induction of IFN-stimulated genes (ISGs) and antiviral proteins; however, the mechanism by which ISGs inhibit adenovirus (Ad) replication is not clearly understood. IFNs repress Ad immediate early gene expression and, consequently, all subsequent aspects of the viral life cycle. In this study, we found that IFN-induced protein with tetratricopeptide repeats 3, IFIT3 (ISG60), restricts Ad replication. IFIT3 repressed Ad E1A immediate early gene expression but did not alter Ad genome entry into the nucleus. Expression of IFIT3 led to phosphorylation of TBK1, IRF3, and STAT1; increased expression of IFNβ and ISGs; and required IFIT1 and IFIT2 partner proteins. During RNA virus infections, it is known that IFIT3 stimulates IFN production through mitochondrial antiviral signaling (MAVS)-mediated activation of TBK1 which synergizes activation of IRF3 and NF-κB. MAVS or TBK1 depletion in cells expressing IFIT3 blocked IFN signaling and reversed the Ad replication restriction. In addition, STING depletion phenocopied the effect suggesting that IFIT3 activates the STING pathway with cross talk to the MAVS pathway. This occurs independently of viral pathogen-associated molecular patterns (PAMPs). These results demonstrate that the expression of a single ISG, IFIT3, activates IFN signaling and establishes a cellular antiviral state independent of viral PAMPs. IMPORTANCE IFITs belong to a family of IFN-induced proteins that have broad antiviral functions, primarily studied with RNA viruses leaving a gap of knowledge on the effects of these proteins on DNA viruses. In this study we show that IFIT3, with its partner proteins IFIT1 and IFIT2, specifically restricts replication of human Ad, a DNA virus, by stimulating IFNβ production via the STING and MAVS pathways. This effect enhanced the IFN response and is independent of viral PAMPs. These results reveal a novel mechanism of activation of IFN signaling to enhance cellular antiviral responses.

[1]  N. Manes,et al.  Molecular Mechanisms of the Toll-Like Receptor, STING, MAVS, Inflammasome, and Interferon Pathways , 2021, mSystems.

[2]  Tiago J. S. Lopes,et al.  Identification of interferon-stimulated genes that attenuate Ebola virus infection , 2020, Nature Communications.

[3]  V. Hornung,et al.  Molecular mechanisms and cellular functions of cGAS–STING signalling , 2020, Nature Reviews Molecular Cell Biology.

[4]  T. Lion Adenovirus persistence, reactivation, and clinical management , 2019, FEBS letters.

[5]  Che A. Stafford,et al.  NOD Signaling and Cell Death , 2019, Front. Cell Dev. Biol..

[6]  S. Swaminathan,et al.  Human IFIT proteins inhibit lytic replication of KSHV: A new feed-forward loop in the innate immune system , 2019, PLoS pathogens.

[7]  T. Sweeney,et al.  Better together: the role of IFIT protein-protein interactions in the antiviral response. , 2018, The Journal of general virology.

[8]  M. Diamond,et al.  Human IFIT3 Modulates IFIT1 RNA Binding Specificity and Protein Stability , 2018, Immunity.

[9]  E. Emmott,et al.  IFIT3 and IFIT2/3 promote IFIT1-mediated translation inhibition by enhancing binding to non-self RNA , 2018, bioRxiv.

[10]  A. García-Sastre,et al.  TRIM25 in the Regulation of the Antiviral Innate Immunity , 2017, Front. Immunol..

[11]  Shao-Cong Sun,et al.  The non-canonical NF-κB pathway in immunity and inflammation , 2017, Nature Reviews Immunology.

[12]  Urs F Greber,et al.  The adenovirus major core protein VII is dispensable for virion assembly but is essential for lytic infection , 2017, PLoS pathogens.

[13]  C. Rice,et al.  Supplemental Information Identification of Interferon-stimulated Genes with Antiretroviral Activity , 2022 .

[14]  E. Lam,et al.  Diminished Innate Antiviral Response to Adenovirus Vectors in cGAS/STING-Deficient Mice Minimally Impacts Adaptive Immunity , 2016, Journal of Virology.

[15]  M. Murakami,et al.  Interferon-stimulated gene (ISG) 60, as well as ISG56 and ISG54, positively regulates TLR3/IFN-β/STAT1 axis in U373MG human astrocytoma cells , 2016, Neuroscience Research.

[16]  Yohei Yamauchi,et al.  Principles of Virus Uncoating: Cues and the Snooker Ball , 2016, Traffic.

[17]  U. Greber Virus and Host Mechanics Support Membrane Penetration and Cell Entry , 2016, Journal of Virology.

[18]  P. Hearing,et al.  E2F/Rb Family Proteins Mediate Interferon Induced Repression of Adenovirus Immediate Early Transcription to Promote Persistent Viral Infection , 2016, PLoS pathogens.

[19]  Nikta Fay,et al.  Nuclear entry of DNA viruses , 2015, Front. Microbiol..

[20]  M. Jin,et al.  Porcine interferon-induced protein with tetratricopeptide repeats 3, poIFIT3, inhibits swine influenza virus replication and potentiates IFN-β production. , 2015, Developmental and comparative immunology.

[21]  Charles M. Rice,et al.  A Serpin Shapes the Extracellular Environment to Prevent Influenza A Virus Maturation , 2015, Cell.

[22]  G. Sen,et al.  Interferon-Induced Ifit Proteins: Their Role in Viral Pathogenesis , 2014, Journal of Virology.

[23]  T. Lion Adenovirus Infections in Immunocompetent and Immunocompromised Patients , 2014, Clinical Microbiology Reviews.

[24]  G. Superti-Furga,et al.  IFITs: Emerging Roles as Key Anti-Viral Proteins , 2014, Front. Immunol..

[25]  U. Greber,et al.  Innate immunity to adenovirus. , 2014, Human gene therapy.

[26]  C. Hellen,et al.  Inhibition of translation by IFIT family members is determined by their ability to interact selectively with the 5′-terminal regions of cap0-, cap1- and 5′ppp- mRNAs , 2013, Nucleic acids research.

[27]  M. Diamond,et al.  Pan-viral specificity of IFN-induced genes reveals new roles for cGAS in innate immunity , 2013, Nature.

[28]  Wan‐Lin Wu,et al.  Protective Roles of Interferon-Induced Protein with Tetratricopeptide Repeats 3 (IFIT3) in Dengue Virus Infection of Human Lung Epithelial Cells , 2013, PloS one.

[29]  A. Pichlmair,et al.  Sequestration by IFIT1 Impairs Translation of 2′O-unmethylated Capped RNA , 2013, PLoS pathogens.

[30]  Jie Liu,et al.  Poly(I:C) inhibits porcine reproductive and respiratory syndrome virus replication in MARC-145 cells via activation of IFIT3. , 2013, Antiviral research.

[31]  J. Barrett,et al.  Viral Retasking of hBre1/RNF20 to Recruit hPaf1 for Transcriptional Activation , 2013, PLoS Pathogens.

[32]  S. J. Flint,et al.  The Repression Domain of the E1B 55-Kilodalton Protein Participates in Countering Interferon-Induced Inhibition of Adenovirus Replication , 2013, Journal of Virology.

[33]  M. Diamond,et al.  The broad-spectrum antiviral functions of IFIT and IFITM proteins , 2012, Nature Reviews Immunology.

[34]  S. J. Flint,et al.  The Human Adenovirus Type 5 E1B 55 kDa Protein Obstructs Inhibition of Viral Replication by Type I Interferon in Normal Human Cells , 2012, PLoS pathogens.

[35]  J. Torchia,et al.  Adenovirus evasion of interferon-mediated innate immunity by direct antagonism of a cellular histone posttranslational modification. , 2012, Cell host & microbe.

[36]  Wei Chen,et al.  IFN-Induced TPR Protein IFIT3 Potentiates Antiviral Signaling by Bridging MAVS and TBK1 , 2011, The Journal of Immunology.

[37]  G. Superti-Furga,et al.  IFIT1 is an antiviral protein that recognizes 5′-triphosphate RNA , 2011, Nature Immunology.

[38]  Christopher T. Jones,et al.  A diverse array of gene products are effectors of the type I interferon antiviral response , 2011, Nature.

[39]  M. Chelbi-alix,et al.  Role of promyelocytic leukemia protein in host antiviral defense. , 2011, Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research.

[40]  K. Zoon,et al.  Identification of Alpha Interferon-Induced Genes Associated with Antiviral Activity in Daudi Cells and Characterization of IFIT3 as a Novel Antiviral Gene , 2010, Journal of Virology.

[41]  P. Blanchette,et al.  Proteasome-Dependent Degradation of Daxx by the Viral E1B-55K Protein in Human Adenovirus-Infected Cells , 2010, Journal of Virology.

[42]  P. Hearing,et al.  Cellular Proteins PML and Daxx Mediate an Innate Antiviral Defense Antagonized by the Adenovirus E4 ORF3 Protein , 2008, Journal of Virology.

[43]  D. A. Engel,et al.  Transcription releases protein VII from adenovirus chromatin. , 2007, Virology.

[44]  N. Reich,et al.  Adenovirus E4 ORF3 Protein Inhibits the Interferon-Mediated Antiviral Response , 2007, Journal of Virology.

[45]  I. Campbell,et al.  Coordinated Regulation and Widespread Cellular Expression of Interferon-Stimulated Genes (ISG) ISG-49, ISG-54, and ISG-56 in the Central Nervous System after Infection with Distinct Viruses , 2006, Journal of Virology.

[46]  Guoqiang Chen,et al.  RIG-G as a key mediator of the antiproliferative activity of interferon-related pathways through enhancing p21 and p27 proteins , 2006, Proceedings of the National Academy of Sciences.

[47]  K. Rundell,et al.  Critical role for SV40 small-t antigen in human cell transformation. , 2001, Virology.

[48]  C. Samuel,et al.  Adenovirus VAI RNA antagonizes the antiviral action of interferon by preventing activation of the interferon-induced eIF-2α kinase , 1986, Cell.