Visualizing Temporal Dynamics at the Genomic and Metabolic Level
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[1] Chris North,et al. Visualizing Biological Pathways: Requirements Analysis, Systems Evaluation and Research Agenda , 2005, Inf. Vis..
[2] Michael Jünger,et al. Drawing Large Graphs with a Potential-Field-Based Multilevel Algorithm , 2004, GD.
[3] Zhenjun Hu,et al. VisANT 3.0: new modules for pathway visualization, editing, prediction and construction , 2007, Nucleic Acids Res..
[4] Emek Demir,et al. Patikaweb: a Web interface for analyzing biological pathways through advanced querying and visualization , 2006, Bioinform..
[5] Ursula Kummer,et al. A new dynamical layout algorithm for complex biochemical reaction networks , 2005, BMC Bioinformatics.
[6] David Auber,et al. Tulip - A Huge Graph Visualization Framework , 2004, Graph Drawing Software.
[7] Amarnath Gupta,et al. BiologicalNetworks: visualization and analysis tool for systems biology , 2006, Nucleic Acids Res..
[8] Lincoln Stein,et al. Reactome: a knowledgebase of biological pathways , 2004, Nucleic Acids Res..
[9] A Finney,et al. Systems biology markup language: Level 2 and beyond. , 2003, Biochemical Society transactions.
[10] S. Wodak,et al. Graph-based analysis of metabolic networks. , 2002, Ernst Schering Research Foundation workshop.
[11] Imre Vastrik,et al. Reactome: a knowledgebase of biological pathways , 2004, OTM Workshops.
[12] Isabel Rojas,et al. A graph layout algorithm for drawing metabolic pathways , 2001, Bioinform..
[13] Suzanne M. Paley,et al. The Pathway Tools cellular overview diagram and Omics Viewer , 2006, Nucleic acids research.
[14] Falk Schreiber,et al. VANTED: A system for advanced data analysis and visualization in the context of biological networks , 2006, BMC Bioinformatics.
[15] Dong-Eun Chang,et al. Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model , 2002, Molecular microbiology.
[16] Peter D. Karp,et al. EcoCyc: a comprehensive database resource for Escherichia coli , 2004, Nucleic Acids Res..
[17] Hubert Hackl,et al. PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways , 2005, Nucleic Acids Res..
[18] Guy Melançon,et al. Tool for metabolic and regulatory pathways visual analysis , 2003, IS&T/SPIE Electronic Imaging.
[19] Prasanna R. Kolatkar,et al. BioJAKE: A Tool for the Creation, Visualization and Manipulation of Metabolic Pathways , 1998, Pacific Symposium on Biocomputing.
[20] Jörg Schultz,et al. Genome Expression Pathway Analysis Tool – Analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context , 2007, BMC Bioinformatics.
[21] C. Ouzounis,et al. Expansion of the BioCyc collection of pathway/genome databases to 160 genomes , 2005, Nucleic acids research.
[22] Jos B. T. M. Roerdink,et al. Visualizing Genome Expression and Regulatory Network Dynamics in Genomic and Metabolic Context , 2008, Comput. Graph. Forum.
[23] Matthew Suderman,et al. Tools for visually exploring biological networks , 2007, Bioinform..
[24] Detlef Wolf,et al. Visualising Gene Expression in Its Metabolic Context , 2000, Briefings Bioinform..
[25] Ludovic Cottret,et al. Metabolic network visualization eliminating node redundance and preserving metabolic pathways , 2007, BMC Systems Biology.
[26] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[27] Jos B. T. M. Roerdink,et al. Interactive Visualization of Gene Regulatory Networks with Associated Gene Expression Time Series Data , 2008, Visualization in Medicine and Life Sciences.