Cross-Trial Query System for Cancer Clinical Trials

Data sharing represents one of the key objectives and major challenges of today’s cancer research. CancerGrid, a consortium of clinicians, cancer researchers, computational biologists and software engineers from leading UK institutions, is developing open-standards cancer informatics addressing this challenge. The CancerGrid solution involves the representation of a widely accepted clinical trials model in controlled vocabulary and common data elements (CDEs) as the enabling factor for cancer data sharing. This paper describes a cancer data query system that supports data sharing across CancerGrid-compliant clinical trial boundaries. The formal specification of the query system allows the model-driven development of a flexible, web-based interface that cancer researchers with limited IT experience can use to identify and query common data across multiple clinical trials.

[1]  Silvana Castano,et al.  Global Viewing of Heterogeneous Data Sources , 2001, IEEE Trans. Knowl. Data Eng..

[2]  G. Cong,et al.  PRATA : A System for XML Publishing , Integration and View Maintenance , 2006 .

[3]  Jim Davies CancerGrid: Developing Open Standards for Clinical Cancer Informatics , 2005 .

[4]  Ramaswamy Chandramouli,et al.  The Queen's Guard: A Secure Enforcement of Fine-grained Access Control In Distributed Data Analytics Platforms , 2001, ACM Trans. Inf. Syst. Secur..

[5]  Janet A. Dunn,et al.  Tolerability of gemcitabine in paclitaxel-containing, epirubicin/cyclophosphamide-based, adjuvant chemotherapy in the randomized phase III tAnGo trial for invasive higher risk early stage breast cancer. , 2006 .

[6]  Scott Gustafson,et al.  caCORE: A common infrastructure for cancer informatics , 2003, Bioinform..

[7]  Craig A. Knoblock,et al.  Retrieving and Integrating Data from Multiple Information Sources , 1993, Int. J. Cooperative Inf. Syst..

[8]  L O Ogundipe,et al.  Randomisation in clinical trials , 1999, British Journal of Psychiatry.

[9]  Volker Haarslev,et al.  RACER System Description , 2001, IJCAR.

[10]  Anthony Stell,et al.  Supporting the clinical trial recruitment process through the grid , 2006 .

[11]  Jim Woodcock,et al.  Using Z - specification, refinement, and proof , 1996, Prentice Hall international series in computer science.

[12]  Radu Calinescu Model−based SOA generation for cancer clinical trials , 2006 .

[13]  Cheng Hsu,et al.  The model-assisted global query system for multiple databases in distributed enterprises , 1996, TOIS.

[14]  C. Street,et al.  The Cancer Biomedical Informatics Grid (caBIGTM) , 2005, 2005 IEEE Engineering in Medicine and Biology 27th Annual Conference.