NMR analysis of protein interactions.
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[1] Alexandre M J J Bonvin,et al. Various strategies of using residual dipolar couplings in NMR‐driven protein docking: Application to Lys48‐linked di‐ubiquitin and validation against 15N‐relaxation data , 2005, Proteins.
[2] G Marius Clore,et al. Solution NMR Structure of the 48-kDa IIAMannose-HPr Complex of the Escherichia coli Mannose Phosphotransferase System* , 2005, Journal of Biological Chemistry.
[3] M. Ubbink,et al. Structure of the Complex between Plastocyanin and Cytochrome f from the Cyanobacterium Nostoc sp. PCC 7119 as Determined by Paramagnetic NMR , 2005, Journal of Biological Chemistry.
[4] M. Daugherty,et al. A single intermolecular contact mediates intramolecular stabilization of both RNA and protein. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[5] C. Dominguez,et al. The RNA recognition motif, a plastic RNA‐binding platform to regulate post‐transcriptional gene expression , 2005, The FEBS journal.
[6] Andres Ramos,et al. The double‐stranded RNA‐binding motif, a versatile macromolecular docking platform , 2005, The FEBS journal.
[7] Gary W. Daughdrill,et al. NMR chemical shift and relaxation measurements provide evidence for the coupled folding and binding of the p53 transactivation domain , 2005, Nucleic acids research.
[8] C. M. Dupureur. NMR studies of restriction enzyme-DNA interactions: role of conformation in sequence specificity. , 2005, Biochemistry.
[9] I. Shimada,et al. An NMR method for the determination of protein-binding interfaces using dioxygen-induced spin-lattice relaxation enhancement. , 2005, Journal of the American Chemical Society.
[10] W. Chazin,et al. Insights into hRPA32 C-terminal domain–mediated assembly of the simian virus 40 replisome , 2005, Nature Structural &Molecular Biology.
[11] M. Blackledge. Recent progress in the study of biomolecular structure and dynamics in solution from residual dipolar couplings , 2005 .
[12] J. Qin,et al. Structure of an ultraweak protein-protein complex and its crucial role in regulation of cell morphology and motility. , 2005, Molecular cell.
[13] Composition and sequence-dependent binding of RNA to the nucleocapsid protein of Moloney murine leukemia virus. , 2005, Biochemistry.
[14] Gerhard Wagner,et al. Solution structure of the CD3εδ ectodomain and comparison with CD3εγ as a basis for modeling T cell receptor topology and signaling , 2004 .
[15] J. Prestegard,et al. Rapid analysis of large protein-protein complexes using NMR-derived orientational constraints: the 95 kDa complex of LpxA with acyl carrier protein. , 2004, Journal of molecular biology.
[16] M. Ubbink,et al. Transient complexes of redox proteins: structural and dynamic details from NMR studies , 2004, Journal of molecular recognition : JMR.
[17] G. Clore,et al. Characterization of nonspecific protein-DNA interactions by 1H paramagnetic relaxation enhancement. , 2004, Journal of the American Chemical Society.
[18] A. Gronenborn,et al. Versatility of the carboxy‐terminal domain of the α subunit of RNA polymerase in transcriptional activation: use of the DNA contact site as a protein contact site for MarA , 2004, Molecular microbiology.
[19] M. Summers,et al. Structural basis for packaging the dimeric genome of Moloney murine leukaemia virus , 2004, Nature.
[20] S. Becker,et al. Structure and DNA‐binding properties of the cytolysin regulator CylR2 from Enterococcus faecalis , 2004, The EMBO journal.
[21] Hugo O Villar,et al. Using NMR for ligand discovery and optimization. , 2004, Current opinion in chemical biology.
[22] D. Fushman,et al. Determining domain orientation in macromolecules by using spin-relaxation and residual dipolar coupling measurements , 2004 .
[23] A. LiWang,et al. Structure of the C-terminal domain of the clock protein KaiA in complex with a KaiC-derived peptide: implications for KaiC regulation. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[24] R. Kaptein,et al. Structure and Flexibility Adaptation in Nonspecific and Specific Protein-DNA Complexes , 2004, Science.
[25] Haruki Nakamura,et al. Model building of a protein-protein complexed structure using saturation transfer and residual dipolar coupling without paired intermolecular NOE , 2004, Journal of biomolecular NMR.
[26] W. Chazin,et al. Physical Interaction between Replication Protein A and Rad51 Promotes Exchange on Single-stranded DNA* , 2004, Journal of Biological Chemistry.
[27] Michael Sattler,et al. Nucleic acid 3′-end recognition by the Argonaute2 PAZ domain , 2004, Nature Structural &Molecular Biology.
[28] Anthony Henras,et al. Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[29] D. Theobald,et al. Structural basis for telomeric single-stranded DNA recognition by yeast Cdc13. , 2004, Journal of molecular biology.
[30] Charles D Schwieters,et al. Ensemble approach for NMR structure refinement against (1)H paramagnetic relaxation enhancement data arising from a flexible paramagnetic group attached to a macromolecule. , 2004, Journal of the American Chemical Society.
[31] Scott D Emr,et al. Ubiquitin interactions of NZF zinc fingers , 2004, The EMBO journal.
[32] Soyoun Kim,et al. Solution structure of the complex formed by the two N-terminal RNA-binding domains of nucleolin and a pre-rRNA target. , 2004, Journal of molecular biology.
[33] Alexandre M J J Bonvin,et al. A docking approach to the study of copper trafficking proteins; interaction between metallochaperones and soluble domains of copper ATPases. , 2004, Structure.
[34] Rolf Boelens,et al. Structural model of the UbcH5B/CNOT4 complex revealed by combining NMR, mutagenesis, and docking approaches. , 2004, Structure.
[35] Mingjie Zhang,et al. The tetrameric L27 domain complex as an organization platform for supramolecular assemblies , 2004, Nature Structural &Molecular Biology.
[36] Michael Sattler,et al. Structural basis of single-stranded RNA recognition. , 2004, Accounts of chemical research.
[37] H. Dyson,et al. Recognition of the mRNA AU-rich element by the zinc finger domain of TIS11d , 2004, Nature Structural &Molecular Biology.
[38] V. Gaponenko,et al. Improving the Accuracy of NMR Structures of Large Proteins Using Pseudocontact Shifts as Long-Range Restraints , 2004, Journal of biomolecular NMR.
[39] Ernest D Laue,et al. Structural basis of HP1/PXVXL motif peptide interactions and HP1 localisation to heterochromatin , 2004, The EMBO journal.
[40] P. Hajduk,et al. SOS-NMR: a saturation transfer NMR-based method for determining the structures of protein-ligand complexes. , 2004, Journal of the American Chemical Society.
[41] Peter E Wright,et al. Interaction of the TAZ1 Domain of the CREB-Binding Protein with the Activation Domain of CITED2 , 2004, Journal of Biological Chemistry.
[42] G. Marius Clore,et al. Molecular Basis for Synergistic Transcriptional Activation by Oct1 and Sox2 Revealed from the Solution Structure of the 42-kDa Oct1·Sox2·Hoxb1-DNA Ternary Transcription Factor Complex* , 2004, Journal of Biological Chemistry.
[43] E. Reinherz,et al. Solution structure of the CD3epsilondelta ectodomain and comparison with CD3epsilongamma as a basis for modeling T cell receptor topology and signaling. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[44] G. Wagner,et al. Ribosome Loading onto the mRNA Cap Is Driven by Conformational Coupling between eIF4G and eIF4E , 2003, Cell.
[45] Aaron Klug,et al. Crystal structure of a zinc-finger–RNA complex reveals two modes of molecular recognition , 2003, Nature.
[46] V. Dötsch,et al. Fast mapping of protein-protein interfaces by NMR spectroscopy. , 2003, Journal of the American Chemical Society.
[47] Angela M Gronenborn,et al. Filtering and selection of structural models: Combining docking and NMR , 2003, Proteins.
[48] J. Feigon,et al. Structural determinants for the binding of ubiquitin‐like domains to the proteasome , 2003, The EMBO journal.
[49] W. Chazin,et al. NMR study on the interaction between RPA and DNA decamer containing cis-syn cyclobutane pyrimidine dimer in the presence of XPA: implication for damage verification and strand-specific dual incision in nucleotide excision repair. , 2003, Nucleic acids research.
[50] C. Arrowsmith,et al. Chemical shift changes provide evidence for overlapping single-stranded DNA- and XPA-binding sites on the 70 kDa subunit of human replication protein A. , 2003, Nucleic acids research.
[51] S. V. Van Doren,et al. Global orientation of bound MMP-3 and N-TIMP-1 in solution via residual dipolar couplings. , 2003, Biochemistry.
[52] G. Clore,et al. Solution Structure of the Phosphoryl Transfer Complex between the Signal-transducing Protein IIAGlucose and the Cytoplasmic Domain of the Glucose Transporter IICBGlucose of the Escherichia coli Glucose Phosphotransferase System* , 2003, Journal of Biological Chemistry.
[53] M. Bottomley,et al. Crystal structure and nuclear magnetic resonance analyses of the SAND domain from glucocorticoid modulatory element binding protein-1 reveals deoxyribonucleic acid and zinc binding regions. , 2003, Molecular endocrinology.
[54] Gerhard Wagner,et al. Structural basis for negative regulation of hypoxia-inducible factor-1α by CITED2 , 2003, Nature Structural Biology.
[55] W. Salerno,et al. Solution Structure of a CUE-Ubiquitin Complex Reveals a Conserved Mode of Ubiquitin Binding , 2003, Cell.
[56] Primoz Pristovsek,et al. Structural Analysis of the DNA-binding Domain of theErwinia amylovora RcsB Protein and Its Interaction with the RcsAB Box* , 2003, The Journal of Biological Chemistry.
[57] Charles D Schwieters,et al. Docking of protein-protein complexes on the basis of highly ambiguous intermolecular distance restraints derived from 1H/15N chemical shift mapping and backbone 15N-1H residual dipolar couplings using conjoined rigid body/torsion angle dynamics. , 2003, Journal of the American Chemical Society.
[58] C. Dominguez,et al. HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. , 2003, Journal of the American Chemical Society.
[59] D. Wyss,et al. Structures of protein-protein complexes are docked using only NMR restraints from residual dipolar coupling and chemical shift perturbations. , 2002, Journal of the American Chemical Society.
[60] Gerhard Wagner,et al. TreeDock: a tool for protein docking based on minimizing van der Waals energies. , 2002, Journal of the American Chemical Society.
[61] D. Case,et al. Automated prediction of 15N, 13Cα, 13Cβ and 13C′ chemical shifts in proteins using a density functional database , 2001, Journal of biomolecular NMR.
[62] Ana C. Messias,et al. Structural Basis for Recognition of the Intron Branch Site RNA by Splicing Factor 1 , 2001, Science.
[63] J H Prestegard,et al. Partial alignment of biomolecules: an aid to NMR characterization. , 2001, Current opinion in chemical biology.
[64] Françoise Guerlesquin,et al. A novel approach for assesing macromolecular complexes combining soft‐docking calculations with NMR data , 2001, Protein science : a publication of the Protein Society.
[65] H. Kessler,et al. Applications of NMR in drug discovery. , 2001, Current opinion in chemical biology.
[66] F. Allain,et al. Molecular basis of sequence‐specific recognition of pre‐ribosomal RNA by nucleolin , 2000, The EMBO journal.
[67] G M Clore,et al. Accurate and rapid docking of protein-protein complexes on the basis of intermolecular nuclear overhauser enhancement data and dipolar couplings by rigid body minimization. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[68] Hideo Takahashi,et al. A novel NMR method for determining the interfaces of large protein–protein complexes , 2000, Nature Structural Biology.
[69] R. Riek,et al. Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution. , 1997, Proceedings of the National Academy of Sciences of the United States of America.