A machine learning pipeline for supporting differentiation of glioblastomas from single brain metastases

Machine learning has provided, over the last decades, tools for knowledge extraction in complex medical domains. Most of these tools, though, are ad hoc solutions and lack the systematic approach that would be required to become mainstream in medical practice. In this brief paper, we define a machine learning-based analysis pipeline for helping in a difficult problem in the field of neuro-oncology, namely the discrimination of brain glioblastomas from single brain metastases. This pipeline involves source extraction using k-Meansinitialized Convex Non-negative Matrix Factorization and a collection of classifiers, including Logistic Regression, Linear Discriminant Analysis, AdaBoost, and Random Forests.

[1]  W. Youden,et al.  Index for rating diagnostic tests , 1950, Cancer.

[2]  F. Howe,et al.  Differentiation of metastases from high‐grade gliomas using short echo time 1H spectroscopy , 2004, Journal of magnetic resonance imaging : JMRI.

[3]  Sergei Vassilvitskii,et al.  k-means++: the advantages of careful seeding , 2007, SODA '07.

[4]  Franziska Hirschhaeuser,et al.  Lactate: a metabolic key player in cancer. , 2011, Cancer research.

[5]  W. Hamel,et al.  Pattern of Recurrence following Local Chemotherapy with Biodegradable Carmustine (BCNU) Implants in Patients with Glioblastoma , 2004, Journal of Neuro-Oncology.

[6]  C Arús,et al.  Robust discrimination of glioblastomas from metastatic brain tumors on the basis of single‐voxel 1H MRS , 2012, NMR in biomedicine.

[7]  Paulo J. G. Lisboa,et al.  Machine learning in cancer research: implications for personalised medicine , 2008, ESANN.

[8]  T. Scheenen,et al.  Quantitative short echo time 1H MRSI of the peripheral edematous region of human brain tumors in the differentiation between glioblastoma, metastasis, and meningioma , 2012, Journal of magnetic resonance imaging : JMRI.

[9]  Philippe Lambin,et al.  A pathology-based substrate for target definition in radiosurgery of brain metastases. , 2006, International journal of radiation oncology, biology, physics.

[10]  N. Otsu A threshold selection method from gray level histograms , 1979 .

[11]  Paulo J. G. Lisboa,et al.  A Novel Semi-Supervised Methodology for Extracting Tumor Type-Specific MRS Sources in Human Brain Data , 2013, PloS one.

[12]  H. Sebastian Seung,et al.  Algorithms for Non-negative Matrix Factorization , 2000, NIPS.