Sparse Logistic Classifiers for Interpretable Protien Homology Detection
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[1] S. Henikoff,et al. Position-based sequence weights. , 1994, Journal of molecular biology.
[2] Tim J. P. Hubbard,et al. SCOP: a structural classification of proteins database , 1998, Nucleic Acids Res..
[3] David Haussler,et al. A Discriminative Framework for Detecting Remote Protein Homologies , 2000, J. Comput. Biol..
[4] Lawrence R. Rabiner,et al. A tutorial on hidden Markov models and selected applications in speech recognition , 1989, Proc. IEEE.
[5] Jason Weston,et al. Mismatch String Kernels for SVM Protein Classification , 2002, NIPS.
[6] Kiyoshi Asai,et al. Marginalized kernels for biological sequences , 2002, ISMB.
[7] D. Lipman,et al. Improved tools for biological sequence comparison. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[8] I M Gelfand,et al. The sequence determinants of cadherin molecules , 2001, Protein science : a publication of the Protein Society.
[9] Michael Gribskov,et al. Use of Receiver Operating Characteristic (ROC) Analysis to Evaluate Sequence Matching , 1996, Comput. Chem..
[10] Ke Wang,et al. Profile-based string kernels for remote homology detection and motif extraction , 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..
[11] Jason Weston,et al. Semi-supervised Protein Classification Using Cluster Kernels , 2003, NIPS.
[12] Jörg Schultz,et al. HMM Logos for visualization of protein families , 2004, BMC Bioinformatics.
[13] Lawrence R. Rabiner,et al. A tutorial on Hidden Markov Models , 1986 .
[14] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[15] David Haussler,et al. Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology , 1996, Comput. Appl. Biosci..
[16] D. Rubin,et al. Maximum likelihood from incomplete data via the EM - algorithm plus discussions on the paper , 1977 .
[17] David Haussler,et al. Using the Fisher Kernel Method to Detect Remote Protein Homologies , 1999, ISMB.
[18] I. Gelfand,et al. Determining the roles of different chain fragments in recognition of immunoglobulin fold. , 2002, Protein engineering.
[19] Eleazar Eskin,et al. The Spectrum Kernel: A String Kernel for SVM Protein Classification , 2001, Pacific Symposium on Biocomputing.
[20] Sean R. Eddy,et al. Profile hidden Markov models , 1998, Bioinform..
[21] Israel M. Gelfand,et al. Common features in structures and sequences of sandwich-like proteins , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[22] A. D. McLachlan,et al. Profile analysis: detection of distantly related proteins. , 1987, Proceedings of the National Academy of Sciences of the United States of America.
[23] David Madigan,et al. Large-Scale Bayesian Logistic Regression for Text Categorization , 2007, Technometrics.