Development and evaluation of a method for segmentation of cardiac, subcutaneous, and visceral adipose tissue from Dixon magnetic resonance images

Abstract. Magnetic resonance imaging (MRI) has evolved into the gold standard for quantifying excess adiposity, but reliable, efficient use in longitudinal studies requires analysis of large numbers of images. The objective of this study is to develop and evaluate a segmentation method designed to identify cardiac, subcutaneous, and visceral adipose tissue (VAT) in Dixon MRI scans. The proposed method is evaluated using 10 scans from volunteer females 18- to 35-years old, with body mass indexes between 30 and 39.99  kg  /  m2. Cross-sectional area (CSA) for cardiac adipose tissue (CAT), subcutaneous adipose tissue (SAT), and VAT, is compared to manually-traced results from three observers. Comparisons of CSA are made in 191 images for CAT, 394 images for SAT, and 50 images for VAT. The segmentation correlated well with respect to average observer CSA with Pearson correlation coefficient (R2) values of 0.80 for CAT, 0.99 for SAT, and 0.99 for VAT. The proposed method provides accurate segmentation of CAT, SAT, and VAT and provides an option to support longitudinal studies of obesity intervention.

[1]  Yongmin Kim,et al.  A methodology for evaluation of boundary detection algorithms on medical images , 1997, IEEE Transactions on Medical Imaging.

[2]  Diana Wald,et al.  Automatic quantification of subcutaneous and visceral adipose tissue from whole‐body magnetic resonance images suitable for large cohort studies , 2012, Journal of magnetic resonance imaging : JMRI.

[3]  Addison L. Elliott,et al.  Automated segmentation of cardiac adipose tissue in Dixon magnetic resonance images , 2017 .

[4]  U. Schoepf,et al.  Relationship between coronary artery disease and epicardial adipose tissue quantification at cardiac CT: comparison between automatic volumetric measurement and manual bidimensional estimation. , 2010, Academic radiology.

[5]  J. Kullberg,et al.  Automated and reproducible segmentation of visceral and subcutaneous adipose tissue from abdominal MRI , 2007, International Journal of Obesity.

[6]  Demetri Terzopoulos,et al.  Snakes: Active contour models , 2004, International Journal of Computer Vision.

[7]  Emmanuelle Gouillart,et al.  scikit-image: image processing in Python , 2014, PeerJ.

[8]  Oscar Camara,et al.  Generalized Overlap Measures for Evaluation and Validation in Medical Image Analysis , 2006, IEEE Transactions on Medical Imaging.

[9]  J M Bland,et al.  Statistical methods for assessing agreement between two methods of clinical measurement , 1986 .

[10]  Gaël Varoquaux,et al.  The NumPy Array: A Structure for Efficient Numerical Computation , 2011, Computing in Science & Engineering.

[11]  Yuanyuan Wu,et al.  Adipose tissue heterogeneity: implication of depot differences in adipose tissue for obesity complications. , 2013, Molecular aspects of medicine.

[12]  C. Fox,et al.  Ectopic Fat Depots and Cardiovascular Disease , 2011, Circulation.

[13]  Brian B. Avants,et al.  N4ITK: Improved N3 Bias Correction , 2010, IEEE Transactions on Medical Imaging.

[14]  Peter Börnert,et al.  Water/fat‐resolved whole‐heart Dixon coronary MRA: An initial comparison , 2014, Magnetic resonance in medicine.

[15]  Jürgen Gieseke,et al.  3D-Dixon MRI based volumetry of peri- and epicardial fat , 2016, The International Journal of Cardiovascular Imaging.

[16]  Charles A McKenzie,et al.  Evaluation of adipose tissue volume quantification with IDEAL fat–water separation , 2011, Journal of magnetic resonance imaging : JMRI.

[17]  S. Olshansky,et al.  A potential decline in life expectancy in the United States in the 21st century. , 2005, The New England journal of medicine.

[18]  Daniel P. Huttenlocher,et al.  Comparing Images Using the Hausdorff Distance , 1993, IEEE Trans. Pattern Anal. Mach. Intell..

[19]  Goutham Rao,et al.  Assessing adiposity: a scientific statement from the American Heart Association. , 2011, Circulation.

[20]  J. Fitzpatrick,et al.  Whole body fat: content and distribution. , 2013, Progress in nuclear magnetic resonance spectroscopy.

[21]  U. Schoepf,et al.  Prognostic value of epicardial fat volume measurements by computed tomography: a systematic review of the literature , 2015, European Radiology.

[22]  Jean-PierreDesprés Body Fat Distribution and Risk of Cardiovascular Disease , 2012 .

[23]  Damini Dey,et al.  Interscan reproducibility of computer-aided epicardial and thoracic fat measurement from noncontrast cardiac CT. , 2011, Journal of cardiovascular computed tomography.

[24]  A. Horská,et al.  Quantitative comparison and evaluation of software packages for assessment of abdominal adipose tissue distribution by magnetic resonance imaging , 2008, International Journal of Obesity.

[25]  W. T. Dixon Simple proton spectroscopic imaging. , 1984, Radiology.

[26]  D. Vince,et al.  Evaluation of three-dimensional segmentation algorithms for the identification of luminal and medial-adventitial borders in intravascular ultrasound images , 2000, IEEE Transactions on Medical Imaging.

[27]  Luigi Landini,et al.  An accurate and robust method for unsupervised assessment of abdominal fat by MRI , 2004, Journal of magnetic resonance imaging : JMRI.

[28]  D.M. Mount,et al.  An Efficient k-Means Clustering Algorithm: Analysis and Implementation , 2002, IEEE Trans. Pattern Anal. Mach. Intell..

[29]  Ziv Yaniv,et al.  SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research , 2017, Journal of Digital Imaging.

[30]  John D. Hunter,et al.  Matplotlib: A 2D Graphics Environment , 2007, Computing in Science & Engineering.

[31]  Jon D. Klingensmith,et al.  Validation of an automated system for luminal and medial-adventitial border detection in three-dimensional intravascular ultrasound , 2003, The International Journal of Cardiovascular Imaging.

[32]  Felix G. Meinel,et al.  Automated Quantification of Epicardial Adipose Tissue Using CT Angiography: Evaluation of a Prototype Software , 2014, European Radiology.

[33]  Charles A McKenzie,et al.  Validation of volumetric and single‐slice MRI adipose analysis using a novel fully automated segmentation method , 2015, Journal of magnetic resonance imaging : JMRI.

[34]  Thomas Kahn,et al.  Software for automated MRI‐based quantification of abdominal fat and preliminary evaluation in morbidly obese patients , 2013, Journal of magnetic resonance imaging : JMRI.

[35]  M. Borggrefe,et al.  Volumetric Assessment of Epicardial Adipose Tissue With Cardiovascular Magnetic Resonance Imaging , 2007, Obesity.