PlantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters
暂无分享,去创建一个
[1] Xiaoquan Qi,et al. Biosynthesis, regulation, and domestication of bitterness in cucumber , 2014, Science.
[2] D. Sandhu,et al. Gene-Containing Regions of Wheat and the Other Grass Genomes1 , 2002, Plant Physiology.
[3] Nicola J Patron,et al. DNA assembly for plant biology: techniques and tools. , 2014, Current opinion in plant biology.
[4] Tilmann Weber,et al. The evolution of genome mining in microbes - a review. , 2016, Natural product reports.
[5] Wusheng Liu,et al. Advanced genetic tools for plant biotechnology , 2013, Nature Reviews Genetics.
[6] Eun-Jeong Lee,et al. Norcoclaurine Synthase Is a Member of the Pathogenesis-Related 10/Bet v1 Protein Family[W] , 2010, Plant Cell.
[7] Haibao Tang,et al. Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum , 2015, Nature.
[8] T. Ellis,et al. Bricks and blueprints: methods and standards for DNA assembly , 2015, Nature Reviews Molecular Cell Biology.
[9] Nicole K Clay,et al. A new cyanogenic metabolite in Arabidopsis required for inducible pathogen defense , 2015, Nature.
[10] Anne Osbourn,et al. Plant metabolic clusters - from genetics to genomics. , 2016, The New phytologist.
[11] A. Osbourn,et al. Gene clustering in plant specialized metabolism. , 2014, Current opinion in biotechnology.
[12] Kirsten Jørgensen,et al. Genomic clustering of cyanogenic glucoside biosynthetic genes aids their identification in Lotus japonicus and suggests the repeated evolution of this chemical defence pathway. , 2011, The Plant journal : for cell and molecular biology.
[13] B. Keller,et al. Colinearity and gene density in grass genomes. , 2000, Trends in plant science.
[14] A. Osbourn,et al. Triterpene biosynthesis in plants. , 2014, Annual review of plant biology.
[15] H. Vogel,et al. The Gene Controlling the Indole Glucosinolate Modifier1 Quantitative Trait Locus Alters Indole Glucosinolate Structures and Aphid Resistance in Arabidopsis[W] , 2009, The Plant Cell Online.
[16] T. Sakurai,et al. Genome sequence of the palaeopolyploid soybean , 2010, Nature.
[17] A. Osbourn,et al. Metabolic Diversification—Independent Assembly of Operon-Like Gene Clusters in Different Plants , 2008, Science.
[18] Zhengwei Zhu,et al. CD-HIT: accelerated for clustering the next-generation sequencing data , 2012, Bioinform..
[19] Michael A Fischbach,et al. Computational approaches to natural product discovery. , 2015, Nature chemical biology.
[20] A. Osbourn,et al. A gene cluster for secondary metabolism in oat: implications for the evolution of metabolic diversity in plants. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[21] Elise A. R. Serin,et al. Learning from co-expression networks , 2016 .
[22] David M. Goodstein,et al. Phytozome: a comparative platform for green plant genomics , 2011, Nucleic Acids Res..
[23] T. Winzer,et al. A Papaver somniferum 10-Gene Cluster for Synthesis of the Anticancer Alkaloid Noscapine , 2012, Science.
[24] D. Xie,et al. Biosynthesis and Metabolic Engineering of Anthocyanins in Arabidopsis thaliana , 2014, Recent patents on biotechnology.
[25] M Frey,et al. Analysis of a chemical plant defense mechanism in grasses. , 1997, Science.
[26] Andrew G. Sharpe,et al. The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure , 2014, Nature Communications.
[27] Sean R. Eddy,et al. Accelerated Profile HMM Searches , 2011, PLoS Comput. Biol..
[28] E. Birney,et al. Pfam: the protein families database , 2013, Nucleic Acids Res..
[29] Kai Blin,et al. antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences , 2011, Nucleic Acids Res..
[30] Sergio Alan Cervantes-Pérez,et al. Architecture and evolution of a minute plant genome , 2013, Nature.
[31] G. Challis,et al. Discovery of microbial natural products by activation of silent biosynthetic gene clusters , 2015, Nature Reviews Microbiology.
[32] Chao Xie,et al. Fast and sensitive protein alignment using DIAMOND , 2014, Nature Methods.
[33] H. Mori,et al. Genome Structure of the Legume, Lotus japonicus , 2008, DNA research : an international journal for rapid publication of reports on genes and genomes.
[34] Kai Blin,et al. antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters , 2015, Nucleic Acids Res..
[35] T. Molinski,et al. Arabidopsis glucosyltransferase UGT74B1 functions in glucosinolate biosynthesis and auxin homeostasis. , 2004, The Plant journal : for cell and molecular biology.
[36] Anne Osbourn,et al. Computational genomic identification and functional reconstitution of plant natural product biosynthetic pathways , 2016, Natural product reports.
[37] Paul R Jensen,et al. Natural Products and the Gene Cluster Revolution. , 2016, Trends in microbiology.
[38] Christian Rogers,et al. Standards for plant synthetic biology: a common syntax for exchange of DNA parts. , 2015, The New phytologist.
[39] Elizabeth A Kellogg,et al. The evolution of nuclear genome structure in seed plants. , 2004, American journal of botany.
[40] Kai Blin,et al. antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers , 2013, Nucleic Acids Res..
[41] Corinne Da Silva,et al. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome , 2014, Science.
[42] Artem Cherkasov,et al. Scaffold tailoring by a newly detected Pictet-Spenglerase activity of strictosidine synthase: from the common tryptoline skeleton to the rare piperazino-indole framework. , 2012, Journal of the American Chemical Society.
[43] Paul S. Freemont,et al. Delineation of metabolic gene clusters in plant genomes by chromatin signatures , 2016, Nucleic acids research.
[44] Elise A. R. Serin,et al. Learning from Co-expression Networks: Possibilities and Challenges , 2016, Front. Plant Sci..
[45] A. Aharoni,et al. Biosynthesis of Antinutritional Alkaloids in Solanaceous Crops Is Mediated by Clustered Genes , 2013, Science.
[46] Hadi Quesneville,et al. Formation of plant metabolic gene clusters within dynamic chromosomal regions , 2011, Proceedings of the National Academy of Sciences.
[47] Carla S. Jones,et al. Minimum Information about a Biosynthetic Gene cluster. , 2015, Nature chemical biology.
[48] Steven Salzberg,et al. TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders , 2004, Bioinform..
[49] Anne Osbourn,et al. Investigation of terpene diversification across multiple sequenced plant genomes , 2014, Proceedings of the National Academy of Sciences.
[50] Jean-Loup Guillaume,et al. Fast unfolding of communities in large networks , 2008, 0803.0476.